Variant report

Variant	rs6562277
Chromosome Location	chr13:62827010-62827011
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs61700568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6562276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7338643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73496106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73496116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73496131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73496137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73496190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73496201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73498264	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73498269	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948810	chr13:62003256-62968196	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv900257	chr13:62782367-62907090	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv561893	chr13:62807570-62885877	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:62825200-62832600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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