Variant report

Variant	rs6562583
Chromosome Location	chr13:70028775-70028776
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11617665	0.80[ASN][1000 genomes]
rs168459	0.89[ASN][1000 genomes]
rs2483326	0.80[ASN][1000 genomes]
rs352257	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7321900	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7988874	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9572143	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9572146	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9572176	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9572177	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6562583	PCDH9	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:70024800-70032000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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