Variant report

Variant	rs6563105
Chromosome Location	chr13:79966264-79966265
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF274	chr13:79966160-79966651	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr13:79958743..79963128-chr13:79965623..79969929,4	K562	blood:
2	chr13:79964555..79966375-chr13:79975893..79978787,3	MCF-7	breast:
3	chr13:79965413..79968619-chr13:79980082..79982197,3	K562	blood:

Variant related genes	Relation type
RNA5SP33	TF binding region
ENSG00000227354	Chromatin interaction
ENSG00000139746	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7331766	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900586	chr13:79892722-79968467	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv832657	chr13:79904978-80099108	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
3	esv3345310	chr13:79965251-79967874	Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3420739	chr13:79965851-79967449	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv3338010	chr13:79966187-79966367	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3379665	chr13:79966240-79966370	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:79942000-79967400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:79946400-79969200	Weak transcription	Fetal Kidney	kidney
3	chr13:79951200-79979200	Weak transcription	Esophagus	oesophagus
4	chr13:79951600-79969000	Weak transcription	Fetal Brain Male	brain
5	chr13:79951800-79978200	Weak transcription	Aorta	Aorta
6	chr13:79952000-79967200	Weak transcription	Brain Hippocampus Middle	brain
7	chr13:79952000-79967600	Weak transcription	Gastric	stomach
8	chr13:79952200-79967600	Weak transcription	Pancreas	Pancrea
9	chr13:79952200-79967600	Weak transcription	Spleen	Spleen
10	chr13:79952400-79966800	Weak transcription	Thymus	Thymus
11	chr13:79952400-79967000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr13:79952400-79967200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr13:79952400-79967200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr13:79952400-79967200	Weak transcription	Fetal Lung	lung
15	chr13:79952400-79967400	Weak transcription	Fetal Brain Female	brain
16	chr13:79952400-79967600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr13:79952400-79967600	Weak transcription	Left Ventricle	heart
18	chr13:79952400-79967600	Weak transcription	Right Ventricle	heart
19	chr13:79952400-79967800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr13:79952600-79966800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr13:79952600-79977800	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr13:79952800-79966800	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr13:79952800-79966800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr13:79952800-79967200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr13:79952800-79967200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr13:79952800-79967800	Weak transcription	Fetal Stomach	stomach
27	chr13:79953000-79967200	Weak transcription	Fetal Muscle Trunk	muscle
28	chr13:79953000-79967200	Weak transcription	Fetal Muscle Leg	muscle
29	chr13:79953000-79967400	Weak transcription	Placenta	Placenta
30	chr13:79953200-79967400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr13:79953400-79966800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr13:79954400-79969000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr13:79957000-79967200	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr13:79957000-79967200	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr13:79957200-79967000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr13:79957200-79967000	Weak transcription	Duodenum Mucosa	Duodenum
37	chr13:79957200-79967200	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr13:79958600-79966800	Enhancers	Primary T cells from cord blood	blood
39	chr13:79958600-79971000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr13:79958800-79966800	Weak transcription	Fetal Thymus	thymus
41	chr13:79958800-79967200	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr13:79958800-79967600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr13:79958800-79969600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr13:79958800-79969800	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr13:79958800-79969800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr13:79958800-79971000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr13:79958800-79977800	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr13:79960200-79967200	Weak transcription	Fetal Heart	heart
49	chr13:79960400-79967400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr13:79960600-79966800	Weak transcription	Fetal Intestine Small	intestine

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