Variant report

Variant	rs6563700
Chromosome Location	chr13:39948128-39948129
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1575520	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9315678	0.89[AFR][1000 genomes]
rs9315679	0.89[AFR][1000 genomes]
rs9532374	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1036674	chr13:39841482-40008117	Bivalent Enhancer Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39939600-39959600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr13:39939800-39959800	Weak transcription	Fetal Lung	lung
3	chr13:39940200-39953800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr13:39940600-39953800	Weak transcription	Osteobl	bone
5	chr13:39943200-39953800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr13:39944400-39950200	Weak transcription	Brain Angular Gyrus	brain
7	chr13:39944400-39950400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr13:39944400-39957400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr13:39944800-39948800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr13:39945000-39948400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr13:39945000-39948800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr13:39945000-39954400	Weak transcription	HSMMtube	muscle
13	chr13:39945400-39948800	Weak transcription	HMEC	breast
14	chr13:39945400-39951800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr13:39945400-39953800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr13:39945400-39959000	Weak transcription	Brain Substantia Nigra	brain
17	chr13:39945600-39948600	Weak transcription	NHEK	skin
18	chr13:39945600-39951000	Weak transcription	NHLF	lung
19	chr13:39946000-39948200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr13:39946000-39950200	Weak transcription	Fetal Brain Female	brain
21	chr13:39946000-39959000	Weak transcription	NHDF-Ad	bronchial
22	chr13:39947600-39949200	Weak transcription	Gastric	stomach
23	chr13:39947600-39950400	Weak transcription	Colon Smooth Muscle	Colon
24	chr13:39947600-39951000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr13:39947600-39959000	Weak transcription	Right Atrium	heart
26	chr13:39947600-39960600	Weak transcription	Fetal Muscle Leg	muscle
27	chr13:39947800-39948800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr13:39947800-39949200	Weak transcription	Left Ventricle	heart
29	chr13:39947800-39949200	Weak transcription	Right Ventricle	heart
30	chr13:39947800-39949800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr13:39947800-39950000	Weak transcription	Rectal Smooth Muscle	rectum
32	chr13:39947800-39950600	Weak transcription	Aorta	Aorta
33	chr13:39947800-39957400	Weak transcription	Ovary	ovary
34	chr13:39947800-39959400	Weak transcription	Fetal Heart	heart
35	chr13:39948000-39948400	Weak transcription	Placenta Amnion	Placenta Amnion

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