Variant report

Variant	rs6564866
Chromosome Location	chr16:81350441-81350442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:81348969..81350661-chr16:81387216..81389989,2	MCF-7	breast:
2	chr16:81347539..81350872-chr16:81478035..81482618,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153815	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11150385	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2059281	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4888138	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4889304	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7196278	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7200201	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7200204	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7203686	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7499639	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9934395	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv532597	chr16:81009718-81388348	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
4	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
5	nsv1061359	chr16:81349826-81471867	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
6	nsv542992	chr16:81349826-81471867	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81348200-81351800	Active TSS	Breast Myoepithelial Primary Cells	Breast
2	chr16:81349600-81351200	Enhancers	Small Intestine	intestine
3	chr16:81349600-81352000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr16:81349600-81352000	Weak transcription	Gastric	stomach
5	chr16:81349800-81350600	Enhancers	Primary T cells fromperipheralblood	blood
6	chr16:81349800-81350800	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr16:81349800-81352400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr16:81349800-81352400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr16:81349800-81352400	Weak transcription	Esophagus	oesophagus
10	chr16:81349800-81352400	Weak transcription	Left Ventricle	heart
11	chr16:81349800-81352400	Weak transcription	Psoas Muscle	Psoas
12	chr16:81349800-81357800	Weak transcription	Lung	lung
13	chr16:81349800-81358000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr16:81349800-81358400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr16:81349800-81358400	Weak transcription	Ovary	ovary
16	chr16:81349800-81365800	Weak transcription	Aorta	Aorta
17	chr16:81350000-81350600	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr16:81350000-81350600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr16:81350000-81350600	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr16:81350000-81350600	Enhancers	HSMM	muscle
21	chr16:81350000-81350800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr16:81350000-81350800	Enhancers	Fetal Brain Male	brain
23	chr16:81350000-81351000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr16:81350000-81351000	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr16:81350000-81351000	Enhancers	K562	blood
26	chr16:81350000-81351200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr16:81350000-81351200	Enhancers	Brain Angular Gyrus	brain
28	chr16:81350000-81351400	Weak transcription	Brain Substantia Nigra	brain
29	chr16:81350000-81351800	Weak transcription	A549	lung
30	chr16:81350000-81352000	Weak transcription	Colon Smooth Muscle	Colon
31	chr16:81350000-81352000	Weak transcription	Stomach Mucosa	stomach
32	chr16:81350000-81352000	Weak transcription	NH-A	brain
33	chr16:81350000-81352000	Weak transcription	NHDF-Ad	bronchial
34	chr16:81350000-81352200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr16:81350000-81352200	Weak transcription	HSMMtube	muscle
36	chr16:81350000-81352400	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr16:81350000-81352400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr16:81350000-81352400	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr16:81350000-81352400	Weak transcription	Rectal Smooth Muscle	rectum
40	chr16:81350000-81352400	Weak transcription	Stomach Smooth Muscle	stomach
41	chr16:81350000-81352400	Weak transcription	NHLF	lung
42	chr16:81350000-81353000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr16:81350000-81353000	Weak transcription	HUVEC	blood vessel
44	chr16:81350000-81353400	Enhancers	HepG2	liver
45	chr16:81350000-81357200	Weak transcription	Fetal Stomach	stomach
46	chr16:81350000-81358000	Weak transcription	Fetal Intestine Small	intestine
47	chr16:81350000-81358200	Weak transcription	Primary T cells from cord blood	blood
48	chr16:81350000-81358400	Weak transcription	Brain Cingulate Gyrus	brain
49	chr16:81350000-81361400	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr16:81350000-81361600	Weak transcription	Primary B cells from peripheral blood	blood

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