Variant report

Variant	rs656529
Chromosome Location	chr1:168676891-168676892
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:168675092..168677492-chr1:168677685..168680071,3	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs524705	0.81[ASN][1000 genomes]
rs581753	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs586318	0.84[ASN][1000 genomes]
rs597584	0.84[ASN][1000 genomes]
rs603259	0.80[ASN][1000 genomes]
rs612680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs627098	0.86[ASN][1000 genomes]
rs627406	0.86[ASN][1000 genomes]
rs680531	0.80[ASN][1000 genomes]
rs681445	0.81[ASN][1000 genomes]
rs686226	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007846	chr1:168449940-168687265	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
3	nsv831836	chr1:168538779-168716956	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168665600-168677600	Weak transcription	Fetal Heart	heart
2	chr1:168666000-168679000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr1:168670600-168677800	Weak transcription	Small Intestine	intestine
4	chr1:168671400-168677600	Weak transcription	Fetal Intestine Large	intestine
5	chr1:168673800-168678800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:168676000-168677000	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr1:168676000-168677600	Weak transcription	HSMM	muscle
8	chr1:168676200-168677800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:168676200-168677800	Weak transcription	Fetal Stomach	stomach
10	chr1:168676200-168681400	Weak transcription	Gastric	stomach
11	chr1:168676200-168682600	Weak transcription	Right Atrium	heart
12	chr1:168676400-168677600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr1:168676400-168677600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr1:168676400-168677800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr1:168676400-168677800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:168676400-168677800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr1:168676400-168678000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr1:168676400-168687400	Weak transcription	Ovary	ovary
19	chr1:168676600-168677800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr1:168676600-168678000	Weak transcription	Adipose Nuclei	Adipose
21	chr1:168676800-168677000	Enhancers	Pancreas	Pancrea
22	chr1:168676800-168678000	Weak transcription	Colon Smooth Muscle	Colon

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