Variant report

Variant	rs6567465
Chromosome Location	chr20:29646017-29646018
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1985639	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4528842	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6057185	1.00[YRI][hapmap]
rs6057365	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs6087169	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6119074	0.88[JPT][hapmap]
rs6119075	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6119135	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6141198	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8119782	0.88[JPT][hapmap]
rs9917470	0.95[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758518	chr20:29419570-29653908	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv2758791	chr20:29419570-29653908	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv428028	chr20:29419570-29653908	Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv428376	chr20:29419570-29653908	Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1058387	chr20:29479828-29651199	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv1067193	chr20:29525410-29651199	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	esv11674	chr20:29528011-29653880	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv965870	chr20:29570138-29652376	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	esv15335	chr20:29580700-29653880	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv585870	chr20:29603773-29648195	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv585871	chr20:29612406-29648195	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv585872	chr20:29612406-29648263	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv585873	chr20:29616742-29651821	ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv821487	chr20:29629343-29652652	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv828711	chr20:29629343-29652652	Weak transcription ZNF genes & repeats Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv585874	chr20:29633277-29651821	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	esv3401555	chr20:29644191-29653908	ZNF genes & repeats Weak transcription Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3388219	chr20:29644291-29653908	ZNF genes & repeats Weak transcription Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:29645400-29646800	ZNF genes & repeats	Right Ventricle	heart
2	chr20:29645400-29647400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
3	chr20:29645400-29647600	ZNF genes & repeats	Brain Hippocampus Middle	brain
4	chr20:29645400-29647600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
5	chr20:29645400-29647600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
6	chr20:29645400-29647800	ZNF genes & repeats	Brain Substantia Nigra	brain
7	chr20:29645400-29648200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
8	chr20:29645400-29648400	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
9	chr20:29645400-29648400	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr20:29645400-29648400	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
11	chr20:29645400-29648400	ZNF genes & repeats	Fetal Heart	heart
12	chr20:29645400-29648400	ZNF genes & repeats	Fetal Kidney	kidney
13	chr20:29645400-29648600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
14	chr20:29645400-29649800	ZNF genes & repeats	Liver	Liver
15	chr20:29645400-29650600	ZNF genes & repeats	Adipose Nuclei	Adipose
16	chr20:29645400-29653800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr20:29645400-29653800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
18	chr20:29645400-29653800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
19	chr20:29645400-29653800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
20	chr20:29645400-29653800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
21	chr20:29645400-29653800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
22	chr20:29645400-29653800	ZNF genes & repeats	Primary T cells from cord blood	blood
23	chr20:29645400-29653800	ZNF genes & repeats	Fetal Brain Male	brain
24	chr20:29645400-29653800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
25	chr20:29645600-29646600	ZNF genes & repeats	Left Ventricle	heart
26	chr20:29645600-29646600	ZNF genes & repeats	Ovary	ovary
27	chr20:29645600-29647400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr20:29645600-29648400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
29	chr20:29645600-29649400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
30	chr20:29645600-29650000	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr20:29645600-29653800	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr20:29645600-29653800	ZNF genes & repeats	Fetal Lung	lung
33	chr20:29645800-29646600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr20:29645800-29646600	ZNF genes & repeats	Pancreas	Pancrea
35	chr20:29645800-29646800	ZNF genes & repeats	Lung	lung
36	chr20:29645800-29647000	ZNF genes & repeats	Primary B cells from cord blood	blood
37	chr20:29645800-29649400	ZNF genes & repeats	Aorta	Aorta
38	chr20:29645800-29653800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
39	chr20:29645800-29653800	ZNF genes & repeats	Psoas Muscle	Psoas
40	chr20:29646000-29646600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr20:29646000-29646600	ZNF genes & repeats	Esophagus	oesophagus
42	chr20:29646000-29647000	ZNF genes & repeats	Fetal Muscle Trunk	muscle
43	chr20:29646000-29647200	ZNF genes & repeats	Placenta Amnion	Placenta Amnion
44	chr20:29646000-29649400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
45	chr20:29646000-29653800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links