Variant report

Variant	rs6567845
Chromosome Location	chrX:109322396-109322397
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chrX:109320556-109323373	K562	blood:	n/a	n/a

Variant related genes	Relation type
MIR3978	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs5942897	0.89[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531154	chrX:108934095-109332109	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	130 gene(s)	inside rSNPs	diseases
2	esv3369563	chrX:109079631-109573656	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	142 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109267200-109377800	Weak transcription	Primary T cells fromperipheralblood	blood
2	chrX:109280200-109331800	Weak transcription	Primary B cells from cord blood	blood
3	chrX:109289200-109325000	Weak transcription	Psoas Muscle	Psoas
4	chrX:109297000-109324800	Weak transcription	Fetal Thymus	thymus
5	chrX:109300000-109322400	Weak transcription	A549	lung
6	chrX:109300000-109324600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chrX:109304400-109328600	Weak transcription	Hela-S3	cervix
8	chrX:109305000-109325000	Weak transcription	HSMM	muscle
9	chrX:109305000-109330200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chrX:109307400-109324600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chrX:109307600-109329400	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chrX:109311000-109328800	Weak transcription	Left Ventricle	heart
13	chrX:109311600-109324600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chrX:109311600-109324600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chrX:109311800-109324600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chrX:109311800-109329000	Weak transcription	Duodenum Mucosa	Duodenum
17	chrX:109316800-109329000	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chrX:109316800-109329000	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chrX:109317200-109322400	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chrX:109317200-109324800	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chrX:109317200-109329000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chrX:109317400-109323800	Weak transcription	Fetal Intestine Small	intestine
23	chrX:109317600-109329400	Weak transcription	Primary hematopoietic stem cells	blood
24	chrX:109318200-109325000	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chrX:109319400-109328800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chrX:109320200-109328800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chrX:109321400-109325000	Weak transcription	Brain Anterior Caudate	brain
28	chrX:109321800-109323000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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