Variant report

Variant	rs6568632
Chromosome Location	chr6:110421361-110421362
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:110414174..110416824-chr6:110419840..110421905,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6938106	0.81[YRI][hapmap]
rs7775143	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886535	chr6:110377006-110551463	Strong transcription Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	esv2757188	chr6:110389926-110504680	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	esv2759462	chr6:110389926-110504680	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	esv1792799	chr6:110411065-110566597	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110405600-110422800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:110405800-110422800	Weak transcription	Ovary	ovary
3	chr6:110410400-110422800	Weak transcription	Primary B cells from cord blood	blood
4	chr6:110411200-110422800	Weak transcription	NH-A	brain
5	chr6:110416600-110422200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:110416600-110422800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:110417200-110438600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:110417400-110422200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:110417400-110422800	Weak transcription	Aorta	Aorta
10	chr6:110417600-110422600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr6:110418200-110436000	Weak transcription	Fetal Brain Male	brain
12	chr6:110418400-110421600	Weak transcription	Dnd41	blood
13	chr6:110418400-110422800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:110418400-110425000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr6:110418800-110421600	Weak transcription	Liver	Liver
16	chr6:110418800-110421600	Weak transcription	Fetal Intestine Large	intestine
17	chr6:110418800-110422800	Weak transcription	Fetal Kidney	kidney
18	chr6:110418800-110429000	Weak transcription	Fetal Muscle Leg	muscle
19	chr6:110418800-110437200	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr6:110419000-110421600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:110419000-110422200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:110419000-110422200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:110419000-110422400	Weak transcription	Colon Smooth Muscle	Colon
24	chr6:110419000-110422800	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr6:110419000-110422800	Weak transcription	HepG2	liver
26	chr6:110419000-110422800	Weak transcription	NHLF	lung
27	chr6:110419000-110423200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr6:110419000-110423800	Weak transcription	Hela-S3	cervix
29	chr6:110419000-110424600	Weak transcription	Brain Substantia Nigra	brain
30	chr6:110419000-110426600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr6:110419000-110427400	Weak transcription	Fetal Lung	lung
32	chr6:110419000-110428000	Weak transcription	HSMM	muscle
33	chr6:110419000-110431800	Weak transcription	Rectal Smooth Muscle	rectum
34	chr6:110419000-110449600	Weak transcription	Brain Cingulate Gyrus	brain
35	chr6:110419000-110461800	Weak transcription	HSMMtube	muscle
36	chr6:110419200-110422000	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr6:110419200-110422000	Weak transcription	NHDF-Ad	bronchial
38	chr6:110419200-110422800	Weak transcription	Adipose Nuclei	Adipose
39	chr6:110419200-110422800	Weak transcription	HUVEC	blood vessel
40	chr6:110419200-110423000	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr6:110419200-110424200	Weak transcription	Brain Angular Gyrus	brain
42	chr6:110419200-110449600	Weak transcription	Brain Hippocampus Middle	brain
43	chr6:110419400-110422000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr6:110419400-110430800	Weak transcription	Osteobl	bone
45	chr6:110419800-110422800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr6:110419800-110423000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr6:110419800-110429800	Strong transcription	Stomach Smooth Muscle	stomach
48	chr6:110419800-110436400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr6:110420000-110422800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr6:110420000-110422800	Weak transcription	Esophagus	oesophagus

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