Variant report

Variant	rs6569006
Chromosome Location	chr6:118531069-118531070
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1413845	0.96[ASN][1000 genomes]
rs1413846	0.82[ASN][1000 genomes]
rs4259282	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6936121	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7744024	0.82[ASN][1000 genomes]
rs7766406	0.96[ASN][1000 genomes]
rs9481770	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv428153	chr6:118430517-118586974	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1030089	chr6:118436482-118604516	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538427	chr6:118436482-118604516	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118526800-118532400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:118528800-118531400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:118529000-118531200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:118530200-118531200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:118530800-118531200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:118531000-118531400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr6:118531000-118531600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:118531000-118531800	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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