Variant report

Variant	rs6569737
Chromosome Location	chr6:131613602-131613603
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10457568	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10457569	0.91[ASN][1000 genomes]
rs10484765	0.92[CEU][hapmap];0.85[GIH][hapmap];0.83[TSI][hapmap];0.87[EUR][1000 genomes]
rs1190790	0.90[JPT][hapmap]
rs1190791	0.90[JPT][hapmap]
rs1190792	1.00[JPT][hapmap]
rs1190804	0.90[JPT][hapmap]
rs12193505	0.91[ASN][1000 genomes]
rs12196463	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12196504	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12203075	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs12210171	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12213079	0.91[ASN][1000 genomes]
rs12214638	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12215812	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs13211569	0.81[EUR][1000 genomes]
rs1358962	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs1358963	0.91[ASN][1000 genomes]
rs1407532	0.88[EUR][1000 genomes]
rs1407533	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs17652219	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1885640	0.89[CEU][hapmap];0.83[GIH][hapmap];0.83[TSI][hapmap]
rs1923620	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2104209	0.88[EUR][1000 genomes]
rs3777478	0.89[CEU][hapmap];0.85[GIH][hapmap];0.85[TSI][hapmap]
rs3777480	0.92[CEU][hapmap]
rs3777483	0.92[CEU][hapmap];0.85[GIH][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes]
rs3777486	0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs3777488	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3777490	0.91[ASN][1000 genomes]
rs3777494	0.87[EUR][1000 genomes]
rs3822866	0.89[CEU][hapmap]
rs4327722	0.95[EUR][1000 genomes]
rs4404789	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4484548	0.81[EUR][1000 genomes]
rs4626443	0.91[ASN][1000 genomes]
rs4897505	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs4897506	0.91[ASN][1000 genomes]
rs61056763	0.94[EUR][1000 genomes]
rs6922252	0.86[EUR][1000 genomes]
rs6923644	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7744734	0.85[EUR][1000 genomes]
rs7755640	0.92[CEU][hapmap];0.83[GIH][hapmap];0.83[TSI][hapmap]
rs7761587	0.92[CEU][hapmap];0.83[GIH][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes]
rs9483237	0.84[EUR][1000 genomes]
rs9483239	0.82[EUR][1000 genomes]
rs9483244	0.99[EUR][1000 genomes]
rs9483245	0.97[EUR][1000 genomes]
rs9492886	0.84[EUR][1000 genomes]
rs9800458	0.83[EUR][1000 genomes]
rs9800571	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv886664	chr6:131443843-131754930	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv830808	chr6:131521115-131735320	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv886666	chr6:131573433-131666295	Weak transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs6569737	TAAR3	cis	parietal	SCAN
rs6569737	VNN1	cis	cerebellum	SCAN
rs6569737	TAAR1	cis	parietal	SCAN
rs6569737	TBPL1	cis	cerebellum	SCAN
rs6569737	SNORD101	cis	parietal	SCAN
rs6569737	TAAR9	cis	parietal	SCAN

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131571800-131614400	Weak transcription	Gastric	stomach
2	chr6:131587400-131614400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:131591000-131614800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr6:131603200-131613800	Weak transcription	Right Atrium	heart
5	chr6:131603200-131614600	Weak transcription	Lung	lung
6	chr6:131604200-131613800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr6:131606400-131614600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr6:131612000-131614800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:131612200-131613800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:131612200-131614200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:131612200-131615600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr6:131612400-131616400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:131612600-131615400	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr6:131612800-131614000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:131612800-131614600	Enhancers	HepG2	liver
16	chr6:131612800-131614800	Enhancers	Placenta Amnion	Placenta Amnion
17	chr6:131612800-131615000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr6:131612800-131615600	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr6:131612800-131616600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:131613000-131613800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:131613000-131613800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
22	chr6:131613000-131614000	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr6:131613000-131614000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr6:131613000-131614200	Enhancers	Adipose Nuclei	Adipose
25	chr6:131613000-131614800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:131613000-131614800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr6:131613000-131614800	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr6:131613000-131614800	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr6:131613000-131614800	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr6:131613000-131615000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
31	chr6:131613000-131615000	Enhancers	H9 Cell Line	embryonic stem cell
32	chr6:131613000-131615000	Enhancers	Primary T cells from cord blood	blood
33	chr6:131613000-131615000	Enhancers	Fetal Muscle Leg	muscle
34	chr6:131613000-131615600	Enhancers	H1 Cell Line	embryonic stem cell
35	chr6:131613000-131615600	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr6:131613000-131615600	Enhancers	Fetal Intestine Large	intestine
37	chr6:131613000-131615800	Enhancers	Fetal Intestine Small	intestine
38	chr6:131613000-131616400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr6:131613200-131613800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:131613200-131613800	Enhancers	Left Ventricle	heart
41	chr6:131613200-131613800	Enhancers	Pancreas	Pancrea
42	chr6:131613200-131613800	Enhancers	Spleen	Spleen
43	chr6:131613200-131614000	Enhancers	Fetal Lung	lung
44	chr6:131613200-131614600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
45	chr6:131613200-131614600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr6:131613200-131614800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
47	chr6:131613200-131614800	Enhancers	Primary T killer memory cells from peripheral blood	blood
48	chr6:131613200-131614800	Enhancers	Brain Substantia Nigra	brain
49	chr6:131613200-131615000	Enhancers	Primary T cells fromperipheralblood	blood
50	chr6:131613200-131615000	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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