Variant report

Variant	rs656980
Chromosome Location	chr11:65656282-65656283
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAF7	chr11:65655629-65656532	H1-hESC	embryonic stem cell:	n/a	n/a
2	JUND	chr11:65655732-65656314	K562	blood:	n/a	n/a
3	POLR2A	chr11:65655683-65657047	GM12892	blood:	n/a	n/a
4	CTCF	chr11:65654850-65657446	SK-N-SH	brain:	n/a	chr11:65656106-65656119
5	BRCA1	chr11:65655774-65656297	H1-hESC	embryonic stem cell:	n/a	n/a
6	RAD21	chr11:65655359-65656794	IMR90	lung:	n/a	chr11:65656248-65656260 chr11:65655946-65655960
7	STAT5A	chr11:65655419-65656763	GM12878	blood:	n/a	chr11:65655741-65655753 chr11:65656011-65656031 chr11:65656347-65656354
8	GABPA	chr11:65655429-65656679	A549	lung:	n/a	chr11:65655738-65655747 chr11:65656387-65656398
9	UBTF	chr11:65655764-65656679	K562	blood:	n/a	n/a
10	FOSL2	chr11:65655592-65656539	A549	lung:	n/a	chr11:65655630-65655639 chr11:65656398-65656412
11	TRIM28	chr11:65655696-65656421	K562	blood:	n/a	n/a
12	CTCF	chr11:65655746-65656287	HepG2	liver:	n/a	chr11:65656106-65656119
13	KAP1	chr11:65655480-65656592	U2OS	brain:	n/a	n/a
14	SMC3	chr11:65655861-65656511	HepG2	liver:	n/a	n/a
15	RCOR1	chr11:65655639-65656468	GM12878	blood:	n/a	n/a
16	EGR1	chr11:65655707-65656332	H1-hESC	embryonic stem cell:	n/a	chr11:65656014-65656023 chr11:65655737-65655747 chr11:65655738-65655753 chr11:65655739-65655752 chr11:65656048-65656062 chr11:65656220-65656229 chr11:65655739-65655752 chr11:65655961-65655970
17	ELF1	chr11:65655488-65656560	GM12878	blood:	n/a	chr11:65655962-65655971 chr11:65656015-65656024 chr11:65655961-65655972 chr11:65656014-65656025 chr11:65655961-65655972
18	POLR2A	chr11:65655672-65656811	GM18951	blood:	n/a	n/a
19	MTA3	chr11:65655565-65657015	GM12878	blood:	n/a	n/a
20	MAX	chr11:65655268-65656890	A549	lung:	n/a	chr11:65655739-65655749
21	CTCF	chr11:65655656-65656658	H1-hESC	embryonic stem cell:	n/a	chr11:65656106-65656119
22	MYC	chr11:65655497-65656625	NB4	blood:	n/a	chr11:65655739-65655749
23	POLR2A	chr11:65654926-65656797	SK-N-MC	brain:	n/a	n/a
24	TAF1	chr11:65655718-65656401	SK-N-SH	brain:	n/a	n/a
25	SPI1	chr11:65655375-65656499	HL-60	blood:	n/a	n/a
26	EP300	chr11:65655864-65656312	GM12878	blood:	n/a	chr11:65656171-65656184 chr11:65656102-65656118 chr11:65656221-65656230 chr11:65655962-65655969 chr11:65656015-65656022
27	POLR2A	chr11:65654632-65669034	U87	brain:	n/a	n/a
28	ZKSCAN1	chr11:65655414-65656589	Hela-S3	cervix:	n/a	n/a
29	ZNF263	chr11:65655304-65656286	K562	blood:	n/a	n/a
30	POLR2A	chr11:65655284-65657061	ProgFib	skin:	n/a	n/a
31	MAX	chr11:65655737-65656287	K562	blood:	n/a	chr11:65655739-65655749
32	ELF1	chr11:65655369-65656862	SK-N-SH	brain:	n/a	chr11:65655962-65655971 chr11:65656015-65656024 chr11:65655961-65655972 chr11:65656014-65656025 chr11:65655961-65655972
33	GABPA	chr11:65655649-65656347	Hela-S3	cervix:	n/a	chr11:65655738-65655747
34	SIN3A	chr11:65655435-65656295	GM12878	blood:	n/a	n/a
35	PML	chr11:65655646-65656315	GM12878	blood:	n/a	n/a
36	HA-E2F1	chr11:65655338-65656299	MCF-7	breast:	n/a	chr11:65656046-65656058 chr11:65655944-65655953 chr11:65655765-65655774 chr11:65655738-65655747
37	POLR2A	chr11:65655696-65656970	GM19193	blood:	n/a	n/a
38	BHLHE40	chr11:65655777-65656296	GM12878	blood:	n/a	chr11:65655896-65655912 chr11:65655905-65655921
39	E2F6	chr11:65655295-65656586	A549	lung:	n/a	chr11:65656046-65656058 chr11:65655944-65655953 chr11:65655765-65655774 chr11:65655738-65655747 chr11:65656047-65656058 chr11:65656058-65656069
40	TAF1	chr11:65655746-65656442	Hela-S3	cervix:	n/a	n/a
41	NFIC	chr11:65655336-65656335	GM12878	blood:	n/a	chr11:65655929-65655957
42	PML	chr11:65655434-65657029	GM12878	blood:	n/a	n/a
43	POLR2A	chr11:65655369-65656337	Hela-S3	cervix:	n/a	n/a
44	MAX	chr11:65655267-65656592	H1-hESC	embryonic stem cell:	n/a	chr11:65655739-65655749
45	RCOR1	chr11:65655430-65656911	K562	blood:	n/a	n/a
46	SRF	chr11:65655632-65656298	ECC-1	luminal epithelium:	n/a	chr11:65655739-65655749 chr11:65656070-65656080
47	RUNX3	chr11:65655262-65656894	GM12878	blood:	n/a	n/a
48	CTCF	chr11:65655665-65656338	T-47D	breast:	n/a	chr11:65656106-65656119
49	HCFC1	chr11:65655723-65656430	K562	blood:	n/a	n/a
50	RAD21	chr11:65655674-65656425	ECC-1	luminal epithelium:	n/a	chr11:65656248-65656260 chr11:65655946-65655960

No.	Distal block	Cell Line	Cell type
1	chr11:65336026..65338505-chr11:65655594..65658699,3	MCF-7	breast:
2	chr11:65651325..65654107-chr11:65654178..65656416,6	MCF-7	breast:
3	chr11:65654814..65656550-chr11:65837621..65839885,2	MCF-7	breast:
4	chr11:65650800..65661192-chr11:65726307..65736419,31	MCF-7	breast:
5	chr11:65652640..65657924-chr11:65769844..65772901,4	MCF-7	breast:
6	chr11:65428955..65432251-chr11:65654758..65658672,5	K562	blood:
7	chr11:65381281..65383865-chr11:65653428..65656647,3	MCF-7	breast:
8	chr11:65551697..65554555-chr11:65655334..65658299,2	K562	blood:
9	chr11:65654573..65660022-chr11:65726606..65732418,16	MCF-7	breast:
10	chr11:65650579..65663306-chr11:65677153..65690311,39	MCF-7	breast:
11	chr11:65654594..65656480-chr11:65848880..65851795,2	K562	blood:
12	chr11:65478611..65480184-chr11:65654546..65656636,2	MCF-7	breast:
13	chr11:65655587..65656500-chr15:44069090..44069816,2	Hela-S3	cervix:
14	chr11:65654924..65661575-chr11:65833688..65838665,10	K562	blood:
15	chr11:65478350..65482284-chr11:65653854..65660529,8	K562	blood:
16	chr11:65627066..65628314-chr11:65655642..65656516,3	MCF-7	breast:
17	chr11:65109448..65111191-chr11:65655775..65657630,2	K562	blood:
18	chr11:65428985..65431213-chr11:65655731..65657899,2	K562	blood:
19	chr11:65655765..65656528-chr20:30160816..30161327,2	HCT-116	colon:
20	chr11:65557488..65562536-chr11:65655379..65657877,5	K562	blood:
21	chr11:65654924..65660442-chr11:65834310..65838665,6	K562	blood:
22	chr11:65655875..65658695-chr11:66035091..66037770,2	MCF-7	breast:
23	chr11:65656005..65658506-chr11:65823963..65825663,2	MCF-7	breast:
24	chr11:65485673..65489789-chr11:65654054..65658887,6	K562	blood:
25	chr11:65655400..65657605-chr11:65778805..65780715,2	MCF-7	breast:
26	chr11:65477188..65481209-chr11:65654091..65661409,11	K562	blood:
27	chr11:65557488..65560218-chr11:65655379..65657652,3	K562	blood:
28	chr11:65656098..65656730-chr2:38977977..38978645,2	Hela-S3	cervix:
29	chr11:65478149..65481961-chr11:65654535..65657747,6	MCF-7	breast:
30	chr11:65655862..65656576-chr20:44440818..44441372,2	HCT-116	colon:
31	chr11:65655690..65656330-chr11:65728331..65729473,3	MCF-7	breast:
32	chr11:65656237..65656923-chr11:65699586..65700172,2	K562	blood:
33	chr11:65656060..65659299-chr11:65825283..65827500,3	K562	blood:
34	chr11:65654406..65656554-chr11:65818022..65819720,2	MCF-7	breast:
35	chr11:65547541..65549398-chr11:65656149..65657658,2	K562	blood:
36	chr11:65646632..65650808-chr11:65654844..65660529,6	MCF-7	breast:

Variant related genes	Relation type
FIBP	TF binding region
CCDC85B	TF binding region
ENSG00000255038	Chromatin interaction
ENSG00000175573	Chromatin interaction
ENSG00000230613	Chromatin interaction
ENSG00000175115	Chromatin interaction
ENSG00000172977	Chromatin interaction
ENSG00000140264	Chromatin interaction
ENSG00000172500	Chromatin interaction
ENSG00000115875	Chromatin interaction
ENSG00000173465	Chromatin interaction
ENSG00000255120	Chromatin interaction
ENSG00000254470	Chromatin interaction
ENSG00000197136	Chromatin interaction
ENSG00000173039	Chromatin interaction
ENSG00000133884	Chromatin interaction
ENSG00000175550	Chromatin interaction
ENSG00000175334	Chromatin interaction
ENSG00000175063	Chromatin interaction
ENSG00000172543	Chromatin interaction
ENSG00000254762	Chromatin interaction
ENSG00000175467	Chromatin interaction
ENSG00000173327	Chromatin interaction
ENSG00000174903	Chromatin interaction
ENSG00000172732	Chromatin interaction
ENSG00000172922	Chromatin interaction
ENSG00000175315	Chromatin interaction
ENSG00000260233	Chromatin interaction
ENSG00000172818	Chromatin interaction
ENSG00000087365	Chromatin interaction
ENSG00000128886	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 27 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10791830	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1151519	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1204650	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12225345	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2231884	1.00[GIH][hapmap];0.81[JPT][hapmap];0.93[MEX][hapmap];0.80[TSI][hapmap];0.86[EUR][1000 genomes]
rs2303385	0.94[ASW][hapmap];0.83[CHB][hapmap];0.88[LWK][hapmap];0.87[MKK][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes]
rs507062	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs568617	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs583887	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs585557	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58568715	0.84[EUR][1000 genomes]
rs588114	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs596002	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs601863	1.00[ASW][hapmap];0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.96[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs608616	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs622614	1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs625652	0.83[AFR][1000 genomes]
rs641018	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs645900	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs658524	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs658938	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs677931	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs687672	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs693824	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs694994	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7940691	0.83[CHB][hapmap];0.84[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897736	chr11:65335705-65676516	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
2	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
3	esv2758274	chr11:65559893-65722363	Genic enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
4	esv2759834	chr11:65559893-65722363	Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
5	nsv427890	chr11:65559893-65722363	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
6	nsv897761	chr11:65580638-65738566	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases
7	nsv555215	chr11:65581579-65676516	Strong transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
8	nsv897762	chr11:65613218-65758854	Active TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	185 gene(s)	inside rSNPs	diseases
9	nsv897764	chr11:65613348-65695222	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
10	nsv897765	chr11:65623708-65758854	Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
11	nsv832191	chr11:65632329-65806120	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
12	nsv530622	chr11:65649068-65661361	Genic enhancers Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	65 gene(s)	inside rSNPs	diseases

mRNA abundance (count:27)

SNP	Gene	Cis/trans	Tissue	Source
rs656980	SNX32	cis	Artery Aorta	GTEx
rs656980	SNX32	cis	cerebellum	SCAN
rs656980	RBM4	cis	cerebellum	SCAN
rs656980	CTSW	cis	Nerve Tibial	GTEx
rs656980	RAB3IL1	cis	cerebellum	SCAN
rs656980	CTSW	cis	Whole Blood	GTEx
rs656980	FIBP	cis	multi-tissue	Pritchard
rs656980	CTSW	cis	Artery Aorta	GTEx
rs656980	SNX32	cis	Esophagus Mucosa	GTEx
rs656980	FIBP	cis	parietal	SCAN
rs656980	CTSW	cis	Thyroid	GTEx
rs656980	CTSW	cis	multi-tissue	Pritchard
rs656980	CTSW	cis	Esophagus Muscularis	GTEx
rs656980	SNX32	cis	Thyroid	GTEx
rs656980	CTSW	cis	Esophagus Mucosa	GTEx
rs656980	CTSW	cis	Artery Tibial	GTEx
rs656980	SNX32	cis	Esophagus Muscularis	GTEx
rs656980	SNX32	cis	parietal	SCAN
rs656980	FIBP	Cis_1M	lymphoblastoid	RTeQTL
rs656980	RBM14	cis	parietal	SCAN
rs656980	FIBP	cis	lymphoblastoid	seeQTL
rs656980	SNX32	cis	Nerve Tibial	GTEx
rs656980	CTSW	cis	Stomach	GTEx
rs656980	CTSW	cis	lung	GTEx
rs656980	CTSW	Cis_1M	lymphoblastoid	RTeQTL
rs656980	CTSW	cis	lymphoblastoid	seeQTL
rs656980	SNX32	cis	Artery Tibial	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65654600-65656400	Active TSS	A549	lung
2	chr11:65654600-65657200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:65654800-65656600	Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr11:65655000-65656600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr11:65655000-65656800	Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr11:65655000-65657000	Flanking Active TSS	Liver	Liver
7	chr11:65655000-65657200	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr11:65655000-65660200	Flanking Active TSS	Stomach Smooth Muscle	stomach
9	chr11:65655000-65662200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:65655200-65656400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr11:65655200-65656600	Active TSS	H1 Cell Line	embryonic stem cell
12	chr11:65655200-65656600	Active TSS	HUES64 Cell Line	embryonic stem cell
13	chr11:65655200-65656600	Active TSS	iPS-15b Cell Line	embryonic stem cell
14	chr11:65655200-65656600	Active TSS	HSMM	muscle
15	chr11:65655200-65656800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr11:65655200-65657000	Active TSS	Right Atrium	heart
17	chr11:65655200-65657200	Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr11:65655200-65657200	Active TSS	H9 Cell Line	embryonic stem cell
19	chr11:65655200-65657200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:65655200-65657400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr11:65655200-65658200	Active TSS	Aorta	Aorta
22	chr11:65655400-65656400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:65655400-65656400	Active TSS	Brain Cingulate Gyrus	brain
24	chr11:65655400-65656400	Active TSS	Lung	lung
25	chr11:65655400-65656400	Active TSS	Small Intestine	intestine
26	chr11:65655400-65656400	Active TSS	GM12878-XiMat	blood
27	chr11:65655400-65656400	Active TSS	HSMMtube	muscle
28	chr11:65655400-65656400	Active TSS	NHDF-Ad	bronchial
29	chr11:65655400-65656400	Active TSS	NHLF	lung
30	chr11:65655400-65656600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr11:65655400-65656600	Active TSS	HUES6 Cell Line	embryonic stem cell
32	chr11:65655400-65656600	Active TSS	iPS-18 Cell Line	embryonic stem cell
33	chr11:65655400-65656600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr11:65655400-65656600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr11:65655400-65656600	Active TSS	Brain Anterior Caudate	brain
36	chr11:65655400-65656600	Active TSS	Fetal Heart	heart
37	chr11:65655400-65656600	Active TSS	Fetal Kidney	kidney
38	chr11:65655400-65656600	Active TSS	Left Ventricle	heart
39	chr11:65655400-65656600	Active TSS	Ovary	ovary
40	chr11:65655400-65656800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr11:65655400-65657000	Active TSS	Breast Myoepithelial Primary Cells	Breast
42	chr11:65655400-65657000	Active TSS	Psoas Muscle	Psoas
43	chr11:65655400-65657000	Active TSS	K562	blood
44	chr11:65655400-65657200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:65655400-65657200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr11:65655400-65657400	Active TSS	Fetal Brain Female	brain
47	chr11:65655600-65656400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr11:65655600-65656400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr11:65655600-65656400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
50	chr11:65655600-65656400	Active TSS	Primary T helper naive cells from peripheral blood	blood

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