Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10872396	0.87[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs1883613	0.84[JPT][hapmap]
rs2294758	0.84[JPT][hapmap]
rs2294759	0.84[JPT][hapmap]
rs2300079	0.84[JPT][hapmap]
rs2327276	0.80[CEU][hapmap];0.89[JPT][hapmap]
rs3756974	0.84[JPT][hapmap]
rs3813349	0.84[JPT][hapmap]
rs4895943	0.84[GIH][hapmap]
rs4897614	0.83[CEU][hapmap];0.89[JPT][hapmap]
rs6569826	0.95[GIH][hapmap]
rs6569827	0.98[GIH][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6569836	0.83[CEU][hapmap];0.89[JPT][hapmap]
rs6569837	0.83[CEU][hapmap];0.87[CHD][hapmap];0.87[GIH][hapmap];0.89[JPT][hapmap];0.82[MEX][hapmap];0.84[TSI][hapmap]
rs6569839	0.88[CEU][hapmap];0.89[JPT][hapmap]
rs6569843	0.84[JPT][hapmap]
rs6924414	0.84[GIH][hapmap]
rs6927410	0.84[GIH][hapmap]
rs6935500	0.84[JPT][hapmap]
rs6942306	0.83[CEU][hapmap];0.87[CHD][hapmap];0.87[GIH][hapmap];0.89[JPT][hapmap];0.82[MEX][hapmap];0.84[TSI][hapmap]
rs7752016	0.84[GIH][hapmap]
rs9493423	0.84[JPT][hapmap]
rs9493425	0.84[JPT][hapmap]
rs960711	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs6569828	SNORA33	cis	cerebellum	SCAN
rs6569828	VNN2	cis	parietal	SCAN
rs6569828	VNN2	cis	Whole Blood	GTEx
rs6569828	TAAR1	cis	parietal	SCAN
rs6569828	VNN3	cis	Whole Blood	GTEx
rs6569828	VNN1	cis	Whole Blood	GTEx

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133034800-133053200	Weak transcription	Placenta	Placenta
2	chr6:133035400-133044200	Weak transcription	Primary B cells from cord blood	blood
3	chr6:133035600-133040400	Weak transcription	Fetal Intestine Large	intestine
4	chr6:133035600-133040400	Weak transcription	Fetal Intestine Small	intestine
5	chr6:133035600-133041200	Enhancers	Liver	Liver
6	chr6:133037600-133041800	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr6:133037600-133043200	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr6:133037600-133043200	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr6:133038000-133042000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:133038000-133053400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr6:133038200-133041800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:133038600-133039400	Enhancers	Stomach Mucosa	stomach

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