Variant report

Variant	rs6570619
Chromosome Location	chr6:144643952-144643953
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:144605020..144608498-chr6:144642073..144644713,3	MCF-7	breast:
2	chr6:144642782..144645607-chr6:144652878..144655229,2	MCF-7	breast:
3	chr6:144635200..144637936-chr6:144642153..144644921,2	MCF-7	breast:
4	chr6:144641871..144646816-chr6:144650336..144652619,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152818	Chromatin interaction
ENSG00000225311	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12664245	0.80[ASN][1000 genomes]
rs12664304	0.80[ASN][1000 genomes]
rs17073678	0.80[ASN][1000 genomes]
rs36007040	0.82[ASN][1000 genomes]
rs60559108	0.80[ASN][1000 genomes]
rs61087655	0.82[ASN][1000 genomes]
rs6911171	0.83[AMR][1000 genomes]
rs6914753	0.85[AMR][1000 genomes]
rs6915621	0.85[AMR][1000 genomes]
rs6919115	0.83[AMR][1000 genomes]
rs6927798	0.81[ASN][1000 genomes]
rs6941296	0.83[AMR][1000 genomes]
rs73588920	0.83[AMR][1000 genomes]
rs7751351	0.83[AMR][1000 genomes]
rs7768531	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9321968	0.83[AMR][1000 genomes]
rs9321969	0.83[AMR][1000 genomes]
rs9496925	0.83[AMR][1000 genomes]
rs9496928	0.83[AMR][1000 genomes]
rs9496944	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv830832	chr6:144572378-144759023	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2422260	chr6:144574591-144731630	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144616400-144648000	Weak transcription	NHEK	skin
2	chr6:144624400-144648000	Weak transcription	HMEC	breast
3	chr6:144627600-144645800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:144630200-144648400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:144630600-144648200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:144634800-144645000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:144635000-144651000	Weak transcription	Small Intestine	intestine
8	chr6:144635600-144650800	Weak transcription	Aorta	Aorta
9	chr6:144636000-144656200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr6:144636600-144648000	Weak transcription	Brain Anterior Caudate	brain
11	chr6:144636600-144654800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:144636800-144650800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr6:144636800-144654800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr6:144636800-144656400	Weak transcription	Brain Substantia Nigra	brain
15	chr6:144637000-144647600	Weak transcription	Fetal Muscle Leg	muscle
16	chr6:144637000-144651800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr6:144637200-144647800	Weak transcription	Left Ventricle	heart
18	chr6:144637200-144647800	Weak transcription	Right Atrium	heart
19	chr6:144637200-144648000	Weak transcription	Psoas Muscle	Psoas
20	chr6:144637400-144645600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:144637400-144647800	Weak transcription	Fetal Stomach	stomach
22	chr6:144637400-144648400	Weak transcription	Fetal Muscle Trunk	muscle
23	chr6:144637600-144644800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr6:144637600-144647800	Weak transcription	Right Ventricle	heart
25	chr6:144639600-144660200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:144641000-144644400	Enhancers	Liver	Liver
27	chr6:144641000-144645600	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr6:144641200-144644400	Enhancers	NHDF-Ad	bronchial
29	chr6:144641200-144645600	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr6:144641200-144648000	Weak transcription	Lung	lung
31	chr6:144642000-144645000	Weak transcription	Duodenum Mucosa	Duodenum
32	chr6:144642200-144644200	Weak transcription	Brain Germinal Matrix	brain
33	chr6:144642200-144644600	Weak transcription	Fetal Kidney	kidney
34	chr6:144642200-144646200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr6:144642200-144646400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:144642200-144647600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr6:144642200-144647600	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr6:144642200-144654800	Weak transcription	Primary hematopoietic stem cells	blood
39	chr6:144642200-144655200	Weak transcription	Thymus	Thymus
40	chr6:144642200-144659800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:144642400-144645400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr6:144642400-144645600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr6:144642400-144646000	Weak transcription	Adipose Nuclei	Adipose
44	chr6:144642600-144645400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr6:144642600-144647200	Weak transcription	Fetal Heart	heart
46	chr6:144642600-144648000	Weak transcription	Fetal Lung	lung
47	chr6:144642600-144649200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr6:144643000-144644000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr6:144643000-144644200	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr6:144643000-144646600	Enhancers	Stomach Mucosa	stomach

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