Variant report

Variant	rs6571373
Chromosome Location	chr14:31428955-31428956
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:31428661..31430231-chr14:31430956..31433408,2	MCF-7	breast:
2	chr14:31428811..31431049-chr14:31434848..31436931,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1121875	0.82[AFR][1000 genomes]
rs1474801	1.00[AFR][1000 genomes]
rs179697	1.00[AFR][1000 genomes]
rs179703	1.00[AFR][1000 genomes]
rs2179933	1.00[AFR][1000 genomes]
rs4354834	1.00[AFR][1000 genomes]
rs4981800	0.82[AFR][1000 genomes]
rs6571371	0.82[AFR][1000 genomes]
rs6571379	1.00[AFR][1000 genomes]
rs7150937	1.00[AFR][1000 genomes]
rs7156647	1.00[AFR][1000 genomes]
rs7350756	1.00[AFR][1000 genomes]
rs8011685	0.82[AFR][1000 genomes]
rs8020670	0.84[AFR][1000 genomes]
rs9671708	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564169	chr14:30819087-31541494	Strong transcription Genic enhancers ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv901581	chr14:30978745-31585289	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv901585	chr14:31365884-31433473	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv901586	chr14:31365884-31465241	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1231	chr14:31424602-31444721	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31345000-31435400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr14:31360200-31435600	Weak transcription	Gastric	stomach
3	chr14:31362400-31435400	Weak transcription	Colonic Mucosa	Colon
4	chr14:31363000-31430600	Weak transcription	Brain Angular Gyrus	brain
5	chr14:31363000-31435200	Weak transcription	Esophagus	oesophagus
6	chr14:31365800-31435600	Weak transcription	Right Ventricle	heart
7	chr14:31377800-31435600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr14:31378000-31439000	Weak transcription	Psoas Muscle	Psoas
9	chr14:31378800-31435200	Weak transcription	Aorta	Aorta
10	chr14:31378800-31435400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr14:31395000-31435200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr14:31395000-31435200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr14:31396600-31429600	Weak transcription	Brain Substantia Nigra	brain
14	chr14:31410600-31435400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:31413400-31435200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr14:31414800-31434200	Weak transcription	Fetal Kidney	kidney
17	chr14:31415000-31437200	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr14:31415800-31429200	Weak transcription	Lung	lung
19	chr14:31415800-31435200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr14:31416000-31429200	Weak transcription	Brain Anterior Caudate	brain
21	chr14:31416000-31433000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr14:31416000-31435200	Weak transcription	Spleen	Spleen
23	chr14:31416000-31435400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr14:31416000-31435400	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr14:31416000-31435600	Weak transcription	NHLF	lung
26	chr14:31416200-31433600	Weak transcription	Fetal Brain Female	brain
27	chr14:31416200-31434000	Weak transcription	Brain Hippocampus Middle	brain
28	chr14:31416200-31435600	Weak transcription	Thymus	Thymus
29	chr14:31416600-31435600	Weak transcription	Brain Cingulate Gyrus	brain
30	chr14:31416600-31435800	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr14:31416800-31433200	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr14:31417000-31435200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr14:31417000-31435600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr14:31417200-31429200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr14:31418200-31434000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr14:31419200-31434000	Weak transcription	HSMMtube	muscle
37	chr14:31419400-31432400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr14:31419800-31429200	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr14:31420000-31435400	Weak transcription	Fetal Thymus	thymus
40	chr14:31420200-31430800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr14:31420200-31464400	Weak transcription	Stomach Smooth Muscle	stomach
42	chr14:31420800-31433200	Weak transcription	Primary hematopoietic stem cells	blood
43	chr14:31420800-31435400	Weak transcription	NHDF-Ad	bronchial
44	chr14:31423200-31433000	Weak transcription	Fetal Stomach	stomach
45	chr14:31423200-31433200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr14:31423200-31433200	Weak transcription	Fetal Brain Male	brain
47	chr14:31423200-31433200	Weak transcription	Fetal Muscle Trunk	muscle
48	chr14:31423200-31435200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr14:31423200-31435200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr14:31423400-31430800	Weak transcription	Ovary	ovary

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