Variant report

Variant	rs6571588
Chromosome Location	chr14:21438849-21438850
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:21164524..21167490-chr14:21438103..21441098,2	MCF-7	breast:
2	chr14:21432822..21434534-chr14:21436325..21439304,2	K562	blood:
3	chr14:21438371..21441079-chr14:21465707..21468075,2	MCF-7	breast:
4	chr14:21325535..21326543-chr14:21438744..21440024,15	MCF-7	breast:
5	chr14:21438410..21440043-chr14:21441978..21444200,2	MCF-7	breast:
6	chr14:21437415..21439351-chr14:21449337..21451535,2	K562	blood:
7	chr14:21438132..21440725-chr14:21450674..21453864,3	MCF-7	breast:
8	chr14:20937597..20940433-chr14:21438426..21440777,2	MCF-7	breast:
9	chr14:21325537..21326206-chr14:21438780..21439731,4	MCF-7	breast:
10	chr14:21438254..21441187-chr14:21454392..21458605,4	MCF-7	breast:
11	chr14:21438667..21439824-chr14:21560356..21561352,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000258471	Chromatin interaction
ENSG00000165792	Chromatin interaction
ENSG00000258599	Chromatin interaction
ENSG00000165794	Chromatin interaction
ENSG00000198805	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10142695	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758349	chr14:21216108-21471614	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	esv2759972	chr14:21216108-21471614	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	nsv427936	chr14:21216108-21531783	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
4	nsv428293	chr14:21216108-21531783	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
5	nsv832740	chr14:21332060-21545052	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	45 gene(s)	inside rSNPs	diseases
6	nsv1044554	chr14:21334087-21456092	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	nsv470622	chr14:21338824-21469151	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
8	nsv563847	chr14:21338824-21469151	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
9	nsv530009	chr14:21377022-22044608	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
10	nsv530769	chr14:21407536-22139126	Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
11	nsv901475	chr14:21426282-21465489	Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
12	nsv1054126	chr14:21432455-21456092	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6571588	LRP10	cis	parietal	SCAN

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:21429800-21439000	Weak transcription	Right Atrium	heart
2	chr14:21438000-21439000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr14:21438600-21439000	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr14:21438600-21439000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr14:21438600-21439000	Enhancers	Fetal Lung	lung
6	chr14:21438600-21439000	Enhancers	HMEC	breast
7	chr14:21438600-21439000	Enhancers	HUVEC	blood vessel
8	chr14:21438600-21439200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr14:21438800-21439000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
10	chr14:21438800-21439000	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
11	chr14:21438800-21439000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr14:21438800-21439000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr14:21438800-21439000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr14:21438800-21439000	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr14:21438800-21439000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
16	chr14:21438800-21439000	Enhancers	Primary hematopoietic stem cells	blood
17	chr14:21438800-21439000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr14:21438800-21439000	Flanking Bivalent TSS/Enh	Primary T helper memory cells from peripheral blood 1	blood
19	chr14:21438800-21439000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr14:21438800-21439000	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
21	chr14:21438800-21439000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr14:21438800-21439000	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
23	chr14:21438800-21439000	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr14:21438800-21439000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr14:21438800-21439000	Enhancers	Liver	Liver
26	chr14:21438800-21439000	Flanking Active TSS	Brain Angular Gyrus	brain
27	chr14:21438800-21439000	Enhancers	Fetal Intestine Small	intestine
28	chr14:21438800-21439000	Enhancers	Fetal Muscle Trunk	muscle
29	chr14:21438800-21439000	Enhancers	Fetal Stomach	stomach
30	chr14:21438800-21439000	Enhancers	Placenta Amnion	Placenta Amnion
31	chr14:21438800-21439000	Enhancers	Small Intestine	intestine
32	chr14:21438800-21439000	Flanking Active TSS	Dnd41	blood
33	chr14:21438800-21439000	Flanking Active TSS	K562	blood
34	chr14:21438800-21439000	Enhancers	NHLF	lung
35	chr14:21438800-21439200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr14:21438800-21439200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr14:21438800-21439200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
38	chr14:21438800-21439200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
39	chr14:21438800-21439200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr14:21438800-21439200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
41	chr14:21438800-21439200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
42	chr14:21438800-21439200	Enhancers	Primary B cells from peripheral blood	blood
43	chr14:21438800-21439200	Flanking Active TSS	Primary T cells from cord blood	blood
44	chr14:21438800-21439200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
45	chr14:21438800-21439200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
46	chr14:21438800-21439200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr14:21438800-21439200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
48	chr14:21438800-21439200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr14:21438800-21439200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
50	chr14:21438800-21439200	Flanking Active TSS	Brain Anterior Caudate	brain

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