Variant report

Variant	rs6571938
Chromosome Location	chr14:39911375-39911376
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs59925500	1.00[AFR][1000 genomes]
rs7147177	1.00[AFR][1000 genomes]
rs7148644	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs7152348	1.00[AFR][1000 genomes]
rs7156628	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037183	chr14:39736939-39949233	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv542048	chr14:39736939-39949233	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv3523177	chr14:39875036-40128325	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	esv3523178	chr14:39875036-40128325	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
5	nsv832774	chr14:39897746-40060823	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39902400-39911400	Weak transcription	Gastric	stomach
2	chr14:39903000-39912600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr14:39903000-39916400	Weak transcription	Fetal Heart	heart
4	chr14:39903200-39912000	Weak transcription	Aorta	Aorta
5	chr14:39910000-39911800	ZNF genes & repeats	Lung	lung
6	chr14:39910800-39912400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr14:39911000-39911600	Weak transcription	Brain Hippocampus Middle	brain
8	chr14:39911000-39911600	ZNF genes & repeats	Ovary	ovary
9	chr14:39911000-39911600	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr14:39911200-39911400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr14:39911200-39911400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr14:39911200-39911400	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr14:39911200-39911600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
14	chr14:39911200-39911800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr14:39911200-39911800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr14:39911200-39912000	Enhancers	HSMM	muscle
17	chr14:39911200-39912200	Enhancers	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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