Variant report

Variant	rs6573544
Chromosome Location	chr14:64521444-64521445
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10135588	0.88[EUR][1000 genomes]
rs10140978	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10146667	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10151127	0.83[ASN][1000 genomes]
rs11622858	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1255948	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1255950	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1255951	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1255952	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1255955	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1255960	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1255961	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1255964	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1255965	1.00[ASN][1000 genomes]
rs1255968	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1255973	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1262241	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12894671	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1890907	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1890908	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2153477	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2153478	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2781377	0.80[AMR][1000 genomes]
rs2781378	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28572628	0.84[ASN][1000 genomes]
rs4275767	0.91[ASN][1000 genomes]
rs4462521	0.84[ASN][1000 genomes]
rs7146859	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7150982	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7153376	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7157594	0.84[ASN][1000 genomes]
rs7157993	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64466600-64593200	Weak transcription	Colon Smooth Muscle	Colon
2	chr14:64468800-64527200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:64475200-64527200	Weak transcription	Fetal Heart	heart
4	chr14:64479200-64526200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr14:64481400-64574000	Weak transcription	Stomach Mucosa	stomach
6	chr14:64489200-64526600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr14:64489400-64568600	Weak transcription	Small Intestine	intestine
8	chr14:64491200-64565200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr14:64492200-64547400	Weak transcription	Colonic Mucosa	Colon
10	chr14:64499000-64538800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr14:64510600-64527200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:64510800-64526400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr14:64511000-64526200	Weak transcription	Pancreas	Pancrea
14	chr14:64511200-64527000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr14:64512000-64524200	Strong transcription	Dnd41	blood
16	chr14:64512400-64524400	Strong transcription	Placenta	Placenta
17	chr14:64512400-64527600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr14:64512600-64524200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr14:64513800-64522000	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr14:64513800-64526400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr14:64514000-64526200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr14:64514200-64526400	Weak transcription	Spleen	Spleen
23	chr14:64514600-64526400	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr14:64514600-64527200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr14:64515000-64527600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr14:64515600-64522600	Weak transcription	Fetal Intestine Small	intestine
27	chr14:64515600-64526800	Weak transcription	Hela-S3	cervix
28	chr14:64516600-64541400	Weak transcription	HSMM	muscle
29	chr14:64518000-64521600	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr14:64518000-64521600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr14:64518000-64527400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr14:64518200-64523000	Strong transcription	Fetal Stomach	stomach
33	chr14:64518400-64521600	Strong transcription	Primary T cells from cord blood	blood
34	chr14:64518400-64521600	Strong transcription	Primary T helper cells PMA-I stimulated	--
35	chr14:64518800-64526200	Weak transcription	Gastric	stomach
36	chr14:64519000-64522600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr14:64519000-64526200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr14:64519000-64526200	Weak transcription	Esophagus	oesophagus
39	chr14:64519000-64526400	Weak transcription	Aorta	Aorta
40	chr14:64519000-64527000	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr14:64519000-64527200	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr14:64519000-64528000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr14:64519000-64541000	Weak transcription	HUVEC	blood vessel
44	chr14:64519200-64522200	Weak transcription	Ovary	ovary
45	chr14:64519200-64526000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr14:64519200-64526200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr14:64519200-64533200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr14:64519400-64522600	Weak transcription	Fetal Intestine Large	intestine
49	chr14:64519400-64525800	Weak transcription	Fetal Thymus	thymus
50	chr14:64519400-64526200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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