Variant report

Variant	rs6573976
Chromosome Location	chr14:71181571-71181572
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:71164344..71167017-chr14:71180286..71182275,2	MCF-7	breast:
2	chr14:71088532..71090069-chr14:71180055..71181772,18	MCF-7	breast:
3	chr14:71131102..71134046-chr14:71180696..71183672,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258689	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10129529	0.97[ASN][1000 genomes]
rs10134929	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10139774	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11158880	0.96[ASN][1000 genomes]
rs11620710	0.91[CHB][hapmap]
rs11621251	0.81[AMR][1000 genomes]
rs11621269	0.85[CHB][hapmap]
rs11622867	0.86[CHB][hapmap]
rs11626707	0.85[CHB][hapmap]
rs11851046	0.93[ASN][1000 genomes]
rs12433469	0.91[CHB][hapmap]
rs12883244	0.91[CHB][hapmap]
rs2158528	0.85[CHB][hapmap]
rs2332457	0.91[CHB][hapmap]
rs3829955	0.81[AMR][1000 genomes]
rs4899371	0.86[CHB][hapmap]
rs4902847	0.90[CHB][hapmap]
rs4902848	0.91[CHB][hapmap]
rs4902855	0.85[CHB][hapmap]
rs7144832	0.89[ASN][1000 genomes]
rs7151405	0.91[CHB][hapmap]
rs7151957	0.94[ASN][1000 genomes]
rs7153775	0.86[CHB][hapmap]
rs7154907	0.91[CHB][hapmap]
rs7160912	0.91[CHB][hapmap]
rs8005459	0.91[CHB][hapmap]
rs8006539	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8022269	0.87[CHB][hapmap]
rs886600	0.91[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039460	chr14:71176898-71371125	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71174600-71185600	Weak transcription	Lung	lung
2	chr14:71177000-71182200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr14:71177200-71183200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr14:71177200-71185200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr14:71177200-71195600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr14:71177400-71183200	Weak transcription	NHEK	skin
7	chr14:71177400-71183600	Weak transcription	HMEC	breast
8	chr14:71177400-71183800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr14:71178600-71189800	Weak transcription	Fetal Brain Female	brain
10	chr14:71179800-71193200	Weak transcription	Right Atrium	heart
11	chr14:71180200-71183000	Weak transcription	HepG2	liver
12	chr14:71180200-71184200	Weak transcription	Gastric	stomach
13	chr14:71180600-71193800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr14:71180600-71196800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr14:71180600-71196800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr14:71180800-71182200	Weak transcription	Pancreas	Pancrea
17	chr14:71180800-71183200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr14:71180800-71183200	Weak transcription	A549	lung
19	chr14:71180800-71183400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr14:71180800-71183600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr14:71180800-71185200	Weak transcription	Stomach Mucosa	stomach
22	chr14:71180800-71193600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr14:71180800-71196000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr14:71180800-71200800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr14:71181000-71188600	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr14:71181200-71183000	Weak transcription	Liver	Liver
27	chr14:71181200-71186000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr14:71181200-71188400	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr14:71181200-71195800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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