Variant report

Variant	rs6574467
Chromosome Location	chr14:79179745-79179746
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 21 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10131453	1.00[CHB][hapmap];0.98[ASN][1000 genomes]
rs10146003	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12886193	1.00[CHB][hapmap];0.98[ASN][1000 genomes]
rs12886874	1.00[CHB][hapmap];0.98[ASN][1000 genomes]
rs12887197	1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1465481	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2113574	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2241440	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2887859	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4903789	0.85[AMR][1000 genomes]
rs4903790	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6574465	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6574466	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7141190	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7148486	1.00[ASN][1000 genomes]
rs7148791	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7150071	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8008442	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8015985	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8019772	0.85[AMR][1000 genomes]
rs8022743	0.85[AMR][1000 genomes]

mRNA abundance (count:21)

SNP	Gene	Cis/trans	Tissue	Source
rs6574467	CHAD	trans	brain	seeQTL
rs6574467	CACNA1A	trans	brain	seeQTL
rs6574467	TMEM52	trans	brain	seeQTL
rs6574467	DAO	trans	brain	seeQTL
rs6574467	TNFRSF25	trans	brain	seeQTL
rs6574467	ADAMTS5	trans	brain	seeQTL
rs6574467	AMICA1	trans	brain	seeQTL
rs6574467	ADAMTS18	trans	brain	seeQTL
rs6574467	MAGIX	trans	brain	seeQTL
rs6574467	MDGA1	trans	brain	seeQTL
rs6574467	PCP2	trans	brain	seeQTL
rs6574467	USP3	trans	brain	seeQTL
rs6574467	CLK4	trans	brain	seeQTL
rs6574467	MTNR1A	trans	brain	seeQTL
rs6574467	LAMA5	trans	brain	seeQTL
rs6574467	TIMP4	trans	brain	seeQTL
rs6574467	EBF1	trans	brain	seeQTL
rs6574467	SFI1	trans	brain	seeQTL
rs6574467	GRM4	trans	brain	seeQTL
rs6574467	DGKD	trans	brain	seeQTL
rs6574467	EPS8L2	trans	brain	seeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79165000-79181000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr14:79176000-79189000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr14:79176600-79188600	Weak transcription	Brain Anterior Caudate	brain
4	chr14:79177000-79188400	Weak transcription	Brain Angular Gyrus	brain
5	chr14:79177200-79187400	Weak transcription	Brain Germinal Matrix	brain
6	chr14:79177200-79188000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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