Variant report

Variant	rs6574630
Chromosome Location	chr14:81631721-81631722
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:81625899..81627711-chr14:81630317..81632244,2	K562	blood:
2	chr14:81628261..81630205-chr14:81631468..81633058,2	MCF-7	breast:
3	chr14:81627082..81632359-chr14:81683288..81688992,11	K562	blood:
4	chr14:81629127..81632220-chr14:81685534..81688324,5	MCF-7	breast:
5	chr14:81629277..81631931-chr14:81634714..81637137,3	K562	blood:
6	chr14:81629067..81632213-chr14:81683312..81688169,7	K562	blood:
7	chr14:81628202..81631737-chr14:81637177..81639888,3	MCF-7	breast:
8	chr14:81630975..81634065-chr14:81679806..81681376,3	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GTF2A1-1	chr14:81631537-81631725	ENSG00000258999.1

No data

Variant related genes	Relation type
ENSG00000258999	Chromatin interaction
ENSG00000165417	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17094177	1.00[CEU][hapmap]
rs7147692	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832841	chr14:81588322-81743921	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6574630	RASIP1	trans	lymphoblastoid	seeQTL

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81619600-81636000	Weak transcription	Psoas Muscle	Psoas
2	chr14:81627400-81632400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr14:81628600-81631800	Enhancers	K562	blood
4	chr14:81629200-81635600	Weak transcription	Primary B cells from cord blood	blood
5	chr14:81629200-81636200	Weak transcription	Aorta	Aorta
6	chr14:81630000-81636000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr14:81630600-81631800	Flanking Active TSS	Dnd41	blood
8	chr14:81630600-81632000	Enhancers	Fetal Thymus	thymus
9	chr14:81630600-81633000	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr14:81630600-81633400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr14:81630800-81631800	Active TSS	Liver	Liver
12	chr14:81630800-81633000	Enhancers	HepG2	liver
13	chr14:81630800-81635600	Weak transcription	Pancreas	Pancrea
14	chr14:81631000-81632200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr14:81631000-81632400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr14:81631000-81635000	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr14:81631000-81635600	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr14:81631000-81635600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr14:81631000-81635600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr14:81631000-81635600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr14:81631000-81635800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr14:81631000-81635800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr14:81631000-81635800	Weak transcription	Fetal Heart	heart
24	chr14:81631000-81636000	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr14:81631000-81636000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr14:81631000-81636000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr14:81631000-81636000	Weak transcription	HMEC	breast
28	chr14:81631200-81636000	Weak transcription	Left Ventricle	heart
29	chr14:81631600-81633000	Enhancers	Brain Hippocampus Middle	brain
30	chr14:81631600-81633000	Enhancers	Brain Substantia Nigra	brain

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