Variant report

Variant	rs6574655
Chromosome Location	chr14:81908605-81908606
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:81900712..81903820-chr14:81907032..81909631,3	K562	blood:
2	chr14:81906764..81909075-chr14:81914660..81917515,2	MCF-7	breast:
3	chr14:81904676..81908091-chr14:81908114..81911152,3	K562	blood:
4	chr14:81900712..81903820-chr14:81907032..81909631,4	K562	blood:
5	chr14:81903553..81905384-chr14:81907954..81910407,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140022	Chromatin interaction
ENSG00000258675	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10134500	0.80[CEU][hapmap]
rs10134510	0.80[CEU][hapmap];0.90[MEX][hapmap];0.81[TSI][hapmap]
rs10146094	0.80[CEU][hapmap];0.84[LWK][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap];0.86[YRI][hapmap];0.80[AMR][1000 genomes]
rs10146257	0.80[CEU][hapmap]
rs10147793	0.80[CEU][hapmap];0.95[MEX][hapmap]
rs11846919	0.95[ASN][1000 genomes]
rs12588572	0.86[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs17111790	0.86[CHB][hapmap];0.87[CHD][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.82[ASN][1000 genomes]
rs17111797	0.80[CEU][hapmap];0.95[MEX][hapmap]
rs2371599	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs2371602	0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs28414357	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3844534	0.86[CHB][hapmap];0.85[CHD][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap]
rs3853421	0.81[ASN][1000 genomes]
rs4110460	0.82[ASN][1000 genomes]
rs4290414	0.86[CHB][hapmap];0.87[CHD][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.82[ASN][1000 genomes]
rs6574653	0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs6574654	0.88[ASN][1000 genomes]
rs7145713	0.91[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs7156951	0.88[ASN][1000 genomes]
rs7160907	0.82[CHB][hapmap]
rs8020806	0.82[ASN][1000 genomes]
rs8022070	0.86[CHB][hapmap];0.85[CHD][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3358936	chr14:81786719-81928269	Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	nsv1047694	chr14:81831147-82534026	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv542145	chr14:81831147-82534026	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	esv1807931	chr14:81878972-81908605	Bivalent Enhancer Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
5	esv1842834	chr14:81878972-81908605	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Genic enhancers Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
6	esv1844298	chr14:81878972-81908605	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6574655	NGB	cis	cerebellum	SCAN
rs6574655	STON2	cis	parietal	SCAN
rs6574655	STON2	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81904800-81909400	Weak transcription	K562	blood

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