Variant report

Variant	rs6575598
Chromosome Location	chr14:97221838-97221839
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:97221085..97223610-chr14:97225132..97227654,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10136350	1.00[AMR][1000 genomes]
rs1041009	0.91[AFR][1000 genomes]
rs1041011	0.81[AFR][1000 genomes]
rs1118035	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1951836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2025367	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2147011	0.86[AFR][1000 genomes]
rs2181693	1.00[AMR][1000 genomes]
rs6575600	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7143161	0.91[AFR][1000 genomes]
rs912346	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048302	chr14:97000845-97250538	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1041078	chr14:97001679-97279220	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1050075	chr14:97004951-97279220	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97219600-97222000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:97219800-97223800	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr14:97220400-97223400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr14:97221000-97222000	Bivalent Enhancer	Brain Hippocampus Middle	brain
5	chr14:97221000-97222000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
6	chr14:97221000-97222400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:97221000-97222600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr14:97221000-97222600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr14:97221000-97223200	Enhancers	K562	blood
10	chr14:97221000-97223400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr14:97221000-97223800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:97221200-97222000	Enhancers	Fetal Brain Female	brain
13	chr14:97221200-97222200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
14	chr14:97221200-97222400	Enhancers	Fetal Brain Male	brain
15	chr14:97221400-97222000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr14:97221400-97222200	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr14:97221400-97222400	Enhancers	Brain Angular Gyrus	brain
18	chr14:97221400-97222400	Enhancers	Brain Anterior Caudate	brain
19	chr14:97221400-97222600	Enhancers	Brain Germinal Matrix	brain
20	chr14:97221600-97222000	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr14:97221600-97222000	Flanking Active TSS	Brain Cingulate Gyrus	brain
22	chr14:97221600-97222000	Flanking Active TSS	Brain Substantia Nigra	brain
23	chr14:97221600-97222400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr14:97221800-97222400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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