Variant report

Variant	rs657664
Chromosome Location	chr7:129146415-129146416
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10224011	0.82[CHB][hapmap]
rs11768964	1.00[CHB][hapmap]
rs11771549	0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs13223151	1.00[CHD][hapmap]
rs1349402	1.00[CHD][hapmap]
rs2402951	0.82[CHB][hapmap]
rs2598183	0.85[CHB][hapmap]
rs581829	1.00[CHB][hapmap]
rs587499	0.85[CHB][hapmap]
rs610591	0.82[CHB][hapmap]
rs613068	1.00[CHB][hapmap]
rs639605	1.00[CHB][hapmap]
rs655239	1.00[CHB][hapmap]
rs676947	1.00[CHB][hapmap]
rs690872	1.00[CHB][hapmap]
rs691303	0.84[CHB][hapmap]
rs691325	0.85[CHB][hapmap]
rs691476	0.82[CHB][hapmap]
rs692132	1.00[CHB][hapmap]
rs6969620	0.82[CHB][hapmap]
rs7787531	0.82[CHB][hapmap]
rs896158	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831128	chr7:129063040-129240800	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs657664	FAM40B	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129143000-129148800	Weak transcription	Right Atrium	heart
2	chr7:129143200-129154000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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