Variant report

Variant	rs657826
Chromosome Location	chr1:184811737-184811738
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:184811650..184814378-chr1:184821332..184824850,3	K562	blood:
2	chr1:184810241..184812906-chr1:184849891..184851725,2	K562	blood:
3	chr1:184808544..184812531-chr1:184819592..184823009,3	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs234647	0.82[EUR][1000 genomes]
rs234651	0.80[EUR][1000 genomes]
rs234652	0.80[EUR][1000 genomes]
rs234654	0.80[EUR][1000 genomes]
rs234655	0.80[EUR][1000 genomes]
rs234656	0.80[EUR][1000 genomes]
rs234664	0.80[EUR][1000 genomes]
rs489435	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs511033	0.88[ASN][1000 genomes]
rs538337	0.96[ASN][1000 genomes]
rs569243	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs603160	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs639593	0.82[EUR][1000 genomes]
rs641658	0.96[ASN][1000 genomes]
rs642027	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001323	chr1:184525419-185315876	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv535222	chr1:184525419-185315876	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv917126	chr1:184655366-184902273	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv832048	chr1:184660146-184858802	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv508677	chr1:184778620-184825302	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv3843	chr1:184798670-184858114	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184793000-184813000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr1:184795400-184822600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr1:184797200-184830000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr1:184800600-184820800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr1:184801000-184813400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr1:184801800-184821000	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr1:184806600-184812600	Weak transcription	GM12878-XiMat	blood
8	chr1:184807800-184821000	Weak transcription	Aorta	Aorta
9	chr1:184808000-184813400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr1:184808000-184823400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr1:184808200-184821000	Weak transcription	Left Ventricle	heart
12	chr1:184808200-184821400	Weak transcription	Right Ventricle	heart
13	chr1:184808200-184831400	Weak transcription	Gastric	stomach
14	chr1:184808400-184811800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr1:184808400-184812000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr1:184808400-184812400	Weak transcription	Hela-S3	cervix
17	chr1:184808400-184813000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr1:184808400-184821000	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr1:184808400-184821000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr1:184808400-184823200	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr1:184808400-184836000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr1:184808400-184836000	Weak transcription	NHEK	skin
23	chr1:184808600-184812800	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr1:184808800-184812600	Weak transcription	Psoas Muscle	Psoas
25	chr1:184808800-184813000	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr1:184808800-184820800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr1:184808800-184821000	Weak transcription	Fetal Muscle Leg	muscle
28	chr1:184808800-184834800	Weak transcription	Colon Smooth Muscle	Colon
29	chr1:184809200-184814200	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr1:184809200-184814400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr1:184809400-184813000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
32	chr1:184809400-184814200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
33	chr1:184809600-184814000	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr1:184810000-184813200	Enhancers	Primary T cells fromperipheralblood	blood
35	chr1:184810600-184812400	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr1:184811200-184812800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr1:184811400-184812200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr1:184811400-184812600	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr1:184811600-184812000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr1:184811600-184814400	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links