Variant report

Variant	rs6578921
Chromosome Location	chr11:8094502-8094503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8085796..8088311-chr11:8090818..8094631,3	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1406095	0.87[CHB][hapmap];0.89[CHD][hapmap];0.91[GIH][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs4758281	1.00[CEU][hapmap];0.87[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4758282	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4758283	0.88[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7102305	0.86[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7113729	0.92[CEU][hapmap];0.83[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7114018	0.93[ASW][hapmap];0.92[CEU][hapmap];0.83[CHB][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap];0.84[LWK][hapmap];0.94[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7932687	0.81[CEU][hapmap];0.82[CHD][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052808	chr11:8011647-8129191	Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv1829170	chr11:8068594-8216369	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv428249	chr11:8068594-8216369	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6578921	OR51D1	cis	parietal	SCAN
rs6578921	OR51Q1	cis	parietal	SCAN
rs6578921	OR56A3	cis	parietal	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8091600-8100200	Weak transcription	Pancreas	Pancrea
2	chr11:8092600-8094800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
3	chr11:8092600-8095000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:8092800-8094800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
5	chr11:8093000-8101800	Weak transcription	Fetal Brain Female	brain
6	chr11:8093200-8095400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:8093400-8095600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr11:8093400-8095600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
9	chr11:8093600-8094600	Enhancers	H9 Cell Line	embryonic stem cell
10	chr11:8093600-8094800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:8093600-8095200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:8093600-8095400	Enhancers	Brain Anterior Caudate	brain
13	chr11:8093800-8094600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
14	chr11:8094000-8095400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
15	chr11:8094000-8101800	Weak transcription	Brain Angular Gyrus	brain
16	chr11:8094000-8101800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr11:8094200-8094600	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
18	chr11:8094200-8094600	Enhancers	Brain Cingulate Gyrus	brain
19	chr11:8094400-8095200	Enhancers	H1 Cell Line	embryonic stem cell
20	chr11:8094400-8095400	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr11:8094400-8100800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:8094400-8101200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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