Variant report

Variant	rs6580547
Chromosome Location	chr5:147713991-147713992
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs57705155	1.00[AMR][1000 genomes]
rs57729253	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58096503	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6860471	1.00[ASW][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73262447	1.00[AMR][1000 genomes]
rs73262449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73262479	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7707995	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883015	chr5:147404281-147751035	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv599945	chr5:147649181-147720487	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147709400-147749200	Weak transcription	Psoas Muscle	Psoas
2	chr5:147711800-147714200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:147713000-147728800	Weak transcription	Aorta	Aorta
4	chr5:147713400-147721800	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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