Variant report

Variant	rs6580673
Chromosome Location	chr12:48858665-48858666
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10783256	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10875804	0.86[ASN][1000 genomes]
rs11168576	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11168628	0.80[ASN][1000 genomes]
rs11168629	0.80[ASN][1000 genomes]
rs11168630	0.80[ASN][1000 genomes]
rs11168631	0.80[ASN][1000 genomes]
rs11168632	0.80[ASN][1000 genomes]
rs11168633	0.80[ASN][1000 genomes]
rs11168634	0.80[ASN][1000 genomes]
rs11168635	0.80[ASN][1000 genomes]
rs11168636	0.80[ASN][1000 genomes]
rs11168638	0.80[ASN][1000 genomes]
rs11168639	0.80[ASN][1000 genomes]
rs12229098	0.80[ASN][1000 genomes]
rs12230091	0.80[ASN][1000 genomes]
rs12230448	0.80[ASN][1000 genomes]
rs12230471	0.80[ASN][1000 genomes]
rs12231229	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12298871	0.86[ASN][1000 genomes]
rs12300672	0.93[ASN][1000 genomes]
rs12303419	0.86[ASN][1000 genomes]
rs12321745	0.86[ASN][1000 genomes]
rs17122979	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17237094	0.80[ASN][1000 genomes]
rs2251773	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2468942	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2705123	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2705126	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2705141	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2731073	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2731101	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4489787	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6580674	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427911	chr12:48670336-48979396	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:48857200-48862200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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