Variant report

Variant	rs6580804
Chromosome Location	chr12:51576853-51576854
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10783414	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10783416	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10783417	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10783418	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10876143	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10876146	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1565721	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1985457	0.81[EUR][1000 genomes]
rs2029686	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2436645	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2436646	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2436647	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2640511	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2640521	0.80[EUR][1000 genomes]
rs2640523	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2730647	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2730650	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2730654	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2956428	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6580799	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6580800	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6580801	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6580803	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7306522	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7959378	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34039	chr12:51326702-51671911	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	93 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51567400-51577200	Weak transcription	Fetal Kidney	kidney
2	chr12:51567400-51583400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:51567400-51584000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr12:51567400-51610600	Weak transcription	Right Atrium	heart
5	chr12:51574800-51583400	Weak transcription	Aorta	Aorta
6	chr12:51575600-51583600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr12:51575800-51577800	Weak transcription	HepG2	liver
8	chr12:51575800-51583600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr12:51576800-51578800	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr12:51576800-51580800	Enhancers	Fetal Muscle Leg	muscle

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