Variant report

Variant	rs6581075
Chromosome Location	chr12:56042726-56042727
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10783764	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1474447	0.94[ASN][1000 genomes]
rs2555034	0.94[ASN][1000 genomes]
rs2555035	0.84[ASN][1000 genomes]
rs2694014	0.94[ASN][1000 genomes]
rs3953273	0.94[ASN][1000 genomes]
rs4759183	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7133382	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7295016	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7307979	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7965259	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559001	chr12:55507465-56057708	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv948625	chr12:55838718-56118833	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:56040400-56048400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:56040600-56043000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr12:56040800-56046000	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr12:56040800-56046800	Weak transcription	Stomach Mucosa	stomach
5	chr12:56041200-56043800	Weak transcription	HepG2	liver
6	chr12:56041200-56048400	Weak transcription	Lung	lung
7	chr12:56041400-56043000	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr12:56041600-56043800	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr12:56041600-56044800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr12:56042600-56044800	ZNF genes & repeats	Fetal Intestine Small	intestine
11	chr12:56042600-56046000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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