Variant report

Variant	rs6581086
Chromosome Location	chr12:56270799-56270800
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10128982	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10876858	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10876861	0.87[ASN][1000 genomes]
rs11171688	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12298127	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12320309	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12817350	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1463592	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1681082	0.86[ASN][1000 genomes]
rs1701698	0.84[ASN][1000 genomes]
rs1701699	0.84[ASN][1000 genomes]
rs7135133	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs772459	0.83[AFR][1000 genomes]
rs772461	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs772475	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7979046	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9739192	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9739196	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv719	chr12:56246405-56290812	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1051961	chr12:56262220-56629427	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	284 gene(s)	inside rSNPs	diseases
3	esv3347258	chr12:56267734-56298106	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv9827	chr12:56270232-56271795	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:56268400-56272200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr12:56268600-56271000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr12:56269400-56271400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr12:56269800-56274600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr12:56270200-56273600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr12:56270600-56292600	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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