Variant report

Variant	rs6581579
Chromosome Location	chr12:64997752-64997753
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10784415	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3741748	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4964093	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6581580	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832443	chr12:64878856-65057265	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1048199	chr12:64951666-65021700	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
3	nsv541512	chr12:64951666-65021700	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
4	nsv832444	chr12:64981484-65168472	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64993000-65002600	Weak transcription	Duodenum Mucosa	Duodenum
2	chr12:64993400-65001600	Weak transcription	K562	blood
3	chr12:64994200-65001600	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr12:64994200-65002000	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr12:64994200-65002000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr12:64994200-65002000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr12:64994200-65002400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr12:64994400-65001800	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr12:64994600-65001600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr12:64994800-64999600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr12:64994800-65001600	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr12:64995000-64999200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr12:64997400-65002600	Weak transcription	Fetal Heart	heart
14	chr12:64997600-65001800	Weak transcription	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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