Variant report

Variant	rs6581593
Chromosome Location	chr12:40602765-40602766
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11564122	0.94[GIH][hapmap]
rs11564273	0.96[EUR][1000 genomes]
rs17465681	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7135678	0.94[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044685	chr12:40574460-40771612	Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40601400-40604400	Enhancers	Primary B cells from peripheral blood	blood
2	chr12:40601600-40604400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr12:40602000-40603000	Weak transcription	Hela-S3	cervix
4	chr12:40602000-40603800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr12:40602200-40603800	Enhancers	GM12878-XiMat	blood
6	chr12:40602200-40604200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
7	chr12:40602200-40604200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr12:40602200-40604200	Enhancers	Fetal Kidney	kidney
9	chr12:40602200-40604400	Enhancers	Primary hematopoietic stem cells	blood
10	chr12:40602400-40602800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr12:40602400-40604000	Enhancers	A549	lung
12	chr12:40602600-40602800	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr12:40602600-40602800	Enhancers	Primary B cells from cord blood	blood
14	chr12:40602600-40602800	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr12:40602600-40602800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr12:40602600-40603600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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