Variant report

Variant	rs6581710
Chromosome Location	chr12:67042317-67042318
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4313653	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6581711	0.92[ASN][1000 genomes]
rs7953228	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052503	chr12:66293898-67269495	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv541515	chr12:66293898-67269495	Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1040682	chr12:66750103-67328053	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv832449	chr12:66885819-67069953	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67040000-67042600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:67040200-67042400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr12:67040200-67042400	Enhancers	HMEC	breast
4	chr12:67040200-67042600	Enhancers	HSMM	muscle
5	chr12:67040400-67042400	Enhancers	Osteobl	bone
6	chr12:67040800-67042400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr12:67040800-67044000	Enhancers	Fetal Brain Male	brain
8	chr12:67041000-67042400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr12:67041200-67042600	Enhancers	NHEK	skin
10	chr12:67041200-67045000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr12:67041600-67042400	Enhancers	HSMMtube	muscle
12	chr12:67041800-67042400	Enhancers	Esophagus	oesophagus
13	chr12:67041800-67042400	Enhancers	Fetal Lung	lung
14	chr12:67041800-67042400	Enhancers	Fetal Stomach	stomach
15	chr12:67041800-67042600	Enhancers	Fetal Brain Female	brain
16	chr12:67041800-67042600	Enhancers	NH-A	brain
17	chr12:67041800-67043600	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr12:67042000-67042400	Enhancers	NHLF	lung
19	chr12:67042000-67042600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr12:67042000-67042600	Enhancers	Stomach Mucosa	stomach
21	chr12:67042000-67043200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr12:67042000-67047200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr12:67042200-67042400	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr12:67042200-67043800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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