Variant report

Variant	rs6582306
Chromosome Location	chr12:76234811-76234812
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10879988	0.80[EUR][1000 genomes]
rs1275556	0.82[CEU][hapmap]
rs1275565	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs1275612	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs1275613	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs1275614	0.86[EUR][1000 genomes]
rs1275619	0.84[EUR][1000 genomes]
rs1290032	0.86[EUR][1000 genomes]
rs1290033	0.86[EUR][1000 genomes]
rs1291266	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs1565766	0.86[EUR][1000 genomes]
rs2178484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2641449	0.86[EUR][1000 genomes]
rs7309074	0.87[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040583	chr12:75742802-76360276	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv832463	chr12:76136551-76316703	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv899315	chr12:76163309-76385096	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1041730	chr12:76198863-76331900	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:76228600-76239800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:76228600-76250000	Weak transcription	Pancreas	Pancrea
3	chr12:76231000-76237800	Weak transcription	HepG2	liver
4	chr12:76231800-76235400	Weak transcription	Fetal Muscle Leg	muscle
5	chr12:76232200-76235000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr12:76232200-76241400	Weak transcription	Fetal Stomach	stomach
7	chr12:76232400-76235400	Weak transcription	Fetal Brain Male	brain
8	chr12:76232800-76237400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr12:76234200-76235000	Enhancers	Fetal Intestine Small	intestine
10	chr12:76234200-76236000	Enhancers	Fetal Brain Female	brain
11	chr12:76234200-76236200	Enhancers	Fetal Lung	lung
12	chr12:76234600-76236400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr12:76234600-76236600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr12:76234600-76236800	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr12:76234600-76237200	Enhancers	Brain Germinal Matrix	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links