Variant report

Variant	rs6582623
Chromosome Location	chr12:46613394-46613395
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:46611489..46616057-chr12:46626284..46631509,6	MCF-7	breast:
2	chr12:46611672..46615140-chr12:46658386..46664443,5	K562	blood:
3	chr12:46611087..46613702-chr12:46764972..46767938,2	K562	blood:
4	chr12:46608964..46611081-chr12:46612036..46613850,2	K562	blood:
5	chr12:46611743..46615456-chr12:46661323..46664567,5	MCF-7	breast:
6	chr12:46612067..46613640-chr12:46616342..46619054,2	K562	blood:
7	chr12:46605677..46608421-chr12:46611673..46613533,2	MCF-7	breast:
8	chr12:46593049..46595554-chr12:46612027..46614436,2	MCF-7	breast:
9	chr12:46611766..46613913-chr12:46659130..46661605,2	MCF-7	breast:
10	chr12:46611447..46614258-chr12:46760762..46763199,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000134294	Chromatin interaction
ENSG00000111371	Chromatin interaction
ENSG00000258096	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6582622	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832398	chr12:46611692-46825530	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	181 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:46591000-46613600	Weak transcription	Fetal Brain Male	brain
2	chr12:46591000-46613600	Weak transcription	Gastric	stomach
3	chr12:46592400-46613400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr12:46592800-46654200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr12:46596000-46618200	Weak transcription	Aorta	Aorta
6	chr12:46597400-46614200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr12:46597600-46659600	Weak transcription	Colonic Mucosa	Colon
8	chr12:46600000-46613600	Weak transcription	NHLF	lung
9	chr12:46604000-46613400	Weak transcription	Brain Angular Gyrus	brain
10	chr12:46604000-46623400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr12:46604000-46633800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr12:46604000-46637400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr12:46604200-46613600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr12:46604400-46613400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr12:46604400-46618600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr12:46605000-46615000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr12:46605000-46615200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr12:46605400-46613400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr12:46606400-46613400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr12:46607000-46615000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr12:46607400-46613400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr12:46607400-46613400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr12:46607800-46613400	Weak transcription	A549	lung
24	chr12:46608400-46615000	Enhancers	Primary hematopoietic stem cells	blood
25	chr12:46608400-46618200	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr12:46609000-46614400	Weak transcription	Fetal Stomach	stomach
27	chr12:46609200-46613400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr12:46609200-46613600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr12:46609200-46613600	Weak transcription	Brain Anterior Caudate	brain
30	chr12:46609200-46618600	Enhancers	Primary neutrophils fromperipheralblood	blood
31	chr12:46609600-46613400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr12:46610000-46613400	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr12:46610000-46613400	Weak transcription	Rectal Smooth Muscle	rectum
34	chr12:46610200-46613800	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr12:46610200-46619000	Weak transcription	Psoas Muscle	Psoas
36	chr12:46610400-46613400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr12:46610400-46613400	Weak transcription	Adipose Nuclei	Adipose
38	chr12:46610400-46613600	Weak transcription	Spleen	Spleen
39	chr12:46610400-46624000	Weak transcription	Pancreas	Pancrea
40	chr12:46610600-46613600	Weak transcription	Right Ventricle	heart
41	chr12:46610600-46640000	Weak transcription	Esophagus	oesophagus
42	chr12:46610800-46613600	Flanking Active TSS	Primary T cells from cord blood	blood
43	chr12:46610800-46614400	Weak transcription	Brain Germinal Matrix	brain
44	chr12:46611000-46613800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
45	chr12:46611200-46613400	Weak transcription	HSMMtube	muscle
46	chr12:46611400-46615800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
47	chr12:46611600-46613400	Weak transcription	Brain Substantia Nigra	brain
48	chr12:46611600-46613400	Enhancers	HUVEC	blood vessel
49	chr12:46611600-46616800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr12:46612000-46613600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--

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