Variant report

Variant	rs658344
Chromosome Location	chr10:6487591-6487592
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:6487256..6488315-chr10:6709317..6710337,7	MCF-7	breast:
2	chr10:6487377..6488373-chr10:6719822..6720756,2	K562	blood:
3	chr10:6487347..6488204-chr10:6689555..6690344,2	MCF-7	breast:
4	chr10:6487231..6487858-chr10:6709417..6710239,2	MCF-7	breast:
5	chr10:6486742..6489552-chr10:6709675..6712349,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs4750429	0.82[EUR][1000 genomes]
rs4750432	0.82[EUR][1000 genomes]
rs539103	1.00[EUR][1000 genomes]
rs593608	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs601512	1.00[EUR][1000 genomes]
rs602419	0.90[EUR][1000 genomes]
rs615256	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs616080	1.00[EUR][1000 genomes]
rs619761	0.90[EUR][1000 genomes]
rs629244	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs630196	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs636819	1.00[EUR][1000 genomes]
rs637297	1.00[EUR][1000 genomes]
rs648072	0.90[EUR][1000 genomes]
rs651486	1.00[EUR][1000 genomes]
rs6602704	1.00[EUR][1000 genomes]
rs663532	1.00[EUR][1000 genomes]
rs687083	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6456200-6496600	Weak transcription	Pancreas	Pancrea
2	chr10:6464600-6490600	Strong transcription	Primary T cells from cord blood	blood
3	chr10:6465800-6496200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr10:6465800-6496600	Weak transcription	Psoas Muscle	Psoas
5	chr10:6465800-6501400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:6466400-6487800	Weak transcription	Fetal Stomach	stomach
7	chr10:6467400-6496200	Weak transcription	Lung	lung
8	chr10:6467600-6487600	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr10:6467800-6487600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr10:6468000-6487600	Strong transcription	Primary T helper cells PMA-I stimulated	--
11	chr10:6468000-6487800	Weak transcription	Brain Angular Gyrus	brain
12	chr10:6468200-6496800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr10:6471200-6490200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr10:6473600-6487800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr10:6474200-6490400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr10:6477400-6487800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr10:6477400-6503600	Weak transcription	Gastric	stomach
18	chr10:6478800-6491000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr10:6479800-6487800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr10:6480200-6501000	Weak transcription	Ovary	ovary
21	chr10:6480800-6497600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:6481200-6500200	Weak transcription	Fetal Intestine Small	intestine
23	chr10:6481400-6497800	Weak transcription	Fetal Muscle Trunk	muscle
24	chr10:6483200-6487600	Weak transcription	Brain Substantia Nigra	brain
25	chr10:6484000-6489400	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr10:6484000-6489400	Weak transcription	Fetal Muscle Leg	muscle
27	chr10:6484000-6496200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr10:6484200-6487800	Weak transcription	Brain Cingulate Gyrus	brain
29	chr10:6484200-6487800	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr10:6484200-6496200	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr10:6484200-6496400	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr10:6484400-6487800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr10:6484600-6487800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr10:6484600-6489400	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr10:6484600-6496600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr10:6485400-6487800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr10:6485400-6487800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr10:6485400-6487800	Weak transcription	K562	blood
39	chr10:6485600-6487800	Weak transcription	Primary hematopoietic stem cells	blood
40	chr10:6485600-6487800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr10:6485800-6487800	Weak transcription	Brain Hippocampus Middle	brain
42	chr10:6485800-6488600	Weak transcription	Aorta	Aorta
43	chr10:6486000-6487600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr10:6486600-6487800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr10:6486600-6488800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr10:6486800-6487800	Weak transcription	Dnd41	blood
47	chr10:6487200-6489000	Genic enhancers	Primary T cells fromperipheralblood	blood
48	chr10:6487200-6490600	Genic enhancers	Fetal Thymus	thymus
49	chr10:6487400-6487800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr10:6487400-6487800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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