Variant report

Variant	rs6583969
Chromosome Location	chr10:96826245-96826246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10786182	0.83[ASN][1000 genomes]
rs10882516	0.81[ASN][1000 genomes]
rs10882520	0.80[CHB][hapmap]
rs10882523	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882524	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10882525	0.80[CHB][hapmap];0.81[ASN][1000 genomes]
rs1113129	0.80[CHB][hapmap]
rs11188149	0.80[CHB][hapmap]
rs11188170	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11572120	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13313110	0.81[ASN][1000 genomes]
rs13313124	0.81[ASN][1000 genomes]
rs1341163	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1579029	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1891071	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1891072	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1891073	0.89[CHB][hapmap];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1926705	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1934953	0.85[CHB][hapmap];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1934956	0.95[YRI][hapmap]
rs1934979	0.80[AMR][1000 genomes]
rs1934984	0.81[AMR][1000 genomes]
rs1934985	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2275620	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2275622	0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs3752988	0.81[ASN][1000 genomes]
rs6583968	0.85[CHB][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7077618	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7087256	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7095531	0.85[CHB][hapmap];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7100061	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7898759	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7910936	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9703851	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1035409	chr10:96495177-96832057	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv467436	chr10:96805371-96862286	Genic enhancers Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
5	nsv551964	chr10:96805371-96862286	ZNF genes & repeats Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96824000-96832000	Weak transcription	Pancreas	Pancrea
2	chr10:96824200-96828000	Transcr. at gene 5' and 3'	Liver	Liver

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