Variant report

Variant	rs658494
Chromosome Location	chr11:120984681-120984682
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12802185	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs475731	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs480761	0.98[AFR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs488766	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs520805	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs583842	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs608818	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs612969	0.92[ASN][1000 genomes]
rs617692	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs632121	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs633770	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs636575	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs659042	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524	chr11:120963503-121008167	Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120975800-121005600	Weak transcription	Right Ventricle	heart
2	chr11:120976600-120992200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:120976600-120998400	Weak transcription	Brain Anterior Caudate	brain
4	chr11:120980000-120991000	Weak transcription	Aorta	Aorta
5	chr11:120980600-120998400	Weak transcription	Fetal Brain Female	brain
6	chr11:120981400-120992400	Weak transcription	Brain Germinal Matrix	brain
7	chr11:120983400-120991000	Weak transcription	Fetal Muscle Leg	muscle
8	chr11:120983400-120993400	Weak transcription	Brain Substantia Nigra	brain
9	chr11:120983600-120984800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:120983600-120987600	Weak transcription	Fetal Lung	lung
11	chr11:120983800-120991000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr11:120983800-120992800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr11:120983800-120993200	Weak transcription	Fetal Brain Male	brain
14	chr11:120984200-120984800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:120984400-120985000	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr11:120984400-120993800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr11:120984600-120984800	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr11:120984600-120984800	Enhancers	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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