Variant report

Variant	rs6585379
Chromosome Location	chr10:117834876-117834877
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs56175262	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7086529	0.88[AFR][1000 genomes]
rs7921570	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428568	chr10:117806874-117972993	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117815800-117840400	Weak transcription	HSMM	muscle
2	chr10:117823000-117835800	Weak transcription	HSMMtube	muscle
3	chr10:117831200-117836200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr10:117831200-117840200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:117832000-117842400	Weak transcription	Liver	Liver
6	chr10:117832200-117837200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:117833000-117838800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr10:117833200-117848800	Weak transcription	Colon Smooth Muscle	Colon
9	chr10:117833400-117835800	Weak transcription	Fetal Stomach	stomach
10	chr10:117833400-117841400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr10:117833600-117835800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr10:117833600-117836200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:117834200-117835600	Weak transcription	Fetal Muscle Leg	muscle
14	chr10:117834800-117836000	Weak transcription	Fetal Muscle Trunk	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links