Variant report

Variant	rs6585383
Chromosome Location	chr10:117991880-117991881
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1076972	0.86[ASN][1000 genomes]
rs10885879	0.86[CHB][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs1107030	0.86[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs11197587	0.91[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs11197593	0.87[ASN][1000 genomes]
rs11197594	0.87[ASN][1000 genomes]
rs11812459	0.92[CEU][hapmap]
rs12570087	0.91[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs12761999	0.86[ASN][1000 genomes]
rs12766388	0.86[ASN][1000 genomes]
rs2245070	0.91[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs2245164	0.91[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs2420250	0.87[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs2420252	0.88[CEU][hapmap]
rs2577382	0.91[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs2694763	0.85[CEU][hapmap];0.85[CHB][hapmap];0.85[ASN][1000 genomes]
rs2694764	0.82[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs2694765	0.84[CEU][hapmap];0.84[CHB][hapmap];0.87[ASN][1000 genomes]
rs2694766	0.86[CHB][hapmap];0.85[CHD][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs2694767	0.86[CHB][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs2694768	0.85[ASN][1000 genomes]
rs2694769	0.86[CHB][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs2694770	0.82[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs2694771	0.84[ASN][1000 genomes]
rs2901099	0.86[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs3740572	0.85[CEU][hapmap]
rs3781552	0.86[ASN][1000 genomes]
rs3858325	0.91[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs4562724	0.86[CHB][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs4619067	0.82[ASN][1000 genomes]
rs4751956	0.91[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs4751958	0.89[ASN][1000 genomes]
rs7894329	0.86[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs7908655	0.91[ASN][1000 genomes]
rs7911126	0.91[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832000	chr10:117944492-118116253	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117976800-117999800	Weak transcription	HSMM	muscle
2	chr10:117978200-117995600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:117984600-117996800	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:117986000-117996800	Weak transcription	Liver	Liver
5	chr10:117986600-117995000	Weak transcription	Fetal Stomach	stomach
6	chr10:117989600-117999600	Weak transcription	HSMMtube	muscle
7	chr10:117990200-117992600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:117990200-117993200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:117991400-117993400	Enhancers	Fetal Heart	heart
10	chr10:117991800-117992600	Enhancers	Fetal Lung	lung

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