Variant report

Variant	rs6586160
Chromosome Location	chr10:90740552-90740553
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:90736541..90738043-chr10:90739542..90741763,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10788624	0.83[ASN][1000 genomes]
rs10887876	0.80[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs11202917	0.90[ASN][1000 genomes]
rs11202918	0.85[ASN][1000 genomes]
rs11202922	0.88[ASN][1000 genomes]
rs12359362	0.80[ASN][1000 genomes]
rs12775501	0.80[ASN][1000 genomes]
rs1324551	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs1468063	0.82[JPT][hapmap]
rs1800682	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs1926195	0.80[CHB][hapmap]
rs1926196	0.86[CHB][hapmap]
rs1926197	0.82[ASN][1000 genomes]
rs1926199	0.82[ASN][1000 genomes]
rs1926200	0.82[ASN][1000 genomes]
rs1926201	0.82[ASN][1000 genomes]
rs2234767	0.88[ASN][1000 genomes]
rs3740286	0.86[CHB][hapmap];0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs3758485	0.83[ASN][1000 genomes]
rs3781204	0.81[ASN][1000 genomes]
rs3824730	0.87[CHB][hapmap];0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs3903454	0.85[ASN][1000 genomes]
rs4934433	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4934434	0.81[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs6586161	0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs6586163	0.82[CHB][hapmap]
rs6586164	0.82[CHB][hapmap]
rs6586165	0.82[CHB][hapmap]
rs6586167	0.82[CHB][hapmap]
rs7069841	0.85[ASN][1000 genomes]
rs7076197	0.81[ASN][1000 genomes]
rs7082101	0.85[ASN][1000 genomes]
rs7082720	0.85[ASN][1000 genomes]
rs7097467	0.85[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs7097572	0.86[CHB][hapmap]
rs7910660	0.83[ASN][1000 genomes]
rs7910825	0.85[ASN][1000 genomes]
rs7914490	0.82[ASN][1000 genomes]
rs9325603	0.84[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs9658685	0.84[ASN][1000 genomes]
rs9658769	0.83[JPT][hapmap]
rs978522	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv831943	chr10:90664836-90865834	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90735200-90749800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr10:90735400-90741200	Weak transcription	Right Ventricle	heart
3	chr10:90735600-90740800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr10:90735600-90741600	Weak transcription	Fetal Kidney	kidney
5	chr10:90735600-90746400	Weak transcription	HepG2	liver
6	chr10:90735600-90748600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr10:90735600-90749200	Weak transcription	Fetal Muscle Leg	muscle
8	chr10:90735600-90749200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr10:90735800-90743800	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr10:90735800-90746400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr10:90736400-90742600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr10:90736400-90743200	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr10:90738200-90741600	Enhancers	Liver	Liver
14	chr10:90738200-90741600	Enhancers	Fetal Lung	lung
15	chr10:90738200-90741600	Enhancers	Ovary	ovary
16	chr10:90738200-90744200	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr10:90738200-90744800	Enhancers	Rectal Smooth Muscle	rectum
18	chr10:90738200-90747800	Enhancers	Colon Smooth Muscle	Colon
19	chr10:90738400-90740800	Enhancers	NHLF	lung
20	chr10:90738400-90741000	Enhancers	Osteobl	bone
21	chr10:90738400-90741200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:90738400-90741800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr10:90738400-90742600	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr10:90738800-90740600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr10:90738800-90740600	Flanking Active TSS	Stomach Smooth Muscle	stomach
26	chr10:90738800-90741600	Enhancers	Muscle Satellite Cultured Cells	--
27	chr10:90739000-90740800	Enhancers	NH-A	brain
28	chr10:90739000-90741000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr10:90739000-90741000	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr10:90739000-90741600	Enhancers	HSMMtube	muscle
31	chr10:90739200-90741000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr10:90739200-90741600	Enhancers	HSMM	muscle
33	chr10:90739200-90743000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr10:90739200-90745200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:90739400-90741000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr10:90739400-90741600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr10:90739400-90742600	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr10:90739400-90743800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr10:90739400-90745000	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr10:90739400-90749400	Weak transcription	NHEK	skin
41	chr10:90739600-90740600	Weak transcription	Stomach Mucosa	stomach
42	chr10:90739600-90741000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr10:90739600-90741000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr10:90739600-90741600	Enhancers	NHDF-Ad	bronchial
45	chr10:90739600-90742000	Weak transcription	Brain Hippocampus Middle	brain
46	chr10:90739600-90742000	Enhancers	Right Atrium	heart
47	chr10:90739600-90742200	Enhancers	Small Intestine	intestine
48	chr10:90739600-90742800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr10:90739600-90746400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr10:90739600-90747200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links