Variant report

Variant	rs6586849
Chromosome Location	chr8:19454310-19454311
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:19454050..19455974-chr8:19457211..19459572,2	K562	blood:

Variant related genes	Relation type
ENSG00000147408	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1013438	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10888166	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2958576	0.87[EUR][1000 genomes]
rs4244454	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4410924	0.86[EUR][1000 genomes]
rs4433157	0.87[EUR][1000 genomes]
rs4618713	0.88[EUR][1000 genomes]
rs4633073	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4922065	0.87[EUR][1000 genomes]
rs6586843	0.87[EUR][1000 genomes]
rs6586844	0.87[EUR][1000 genomes]
rs7016845	0.93[EUR][1000 genomes]
rs7831489	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7838412	0.89[EUR][1000 genomes]
rs7841402	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533109	chr8:18845845-19456780	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv949636	chr8:18957705-19664732	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv948861	chr8:19199688-19609029	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv949304	chr8:19199688-19625912	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	esv34007	chr8:19252602-19482098	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv890624	chr8:19319061-19456270	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv890625	chr8:19368697-19799641	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv890626	chr8:19383697-19483259	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv890627	chr8:19389865-19561997	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv610754	chr8:19419494-19525294	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1021575	chr8:19430653-19623452	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv465601	chr8:19434021-19456473	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv610755	chr8:19434021-19456473	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv610756	chr8:19434021-19471977	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv1025271	chr8:19435147-19574969	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19434000-19457800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr8:19435000-19457200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr8:19437800-19456200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr8:19437800-19459600	Weak transcription	Right Ventricle	heart
5	chr8:19439000-19458600	Weak transcription	Brain Anterior Caudate	brain
6	chr8:19442400-19455200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr8:19445000-19457600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr8:19445400-19455000	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr8:19445600-19457200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr8:19445600-19457200	Weak transcription	Left Ventricle	heart
11	chr8:19445600-19459600	Weak transcription	Placenta	Placenta
12	chr8:19445600-19461400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr8:19445600-19481400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr8:19448000-19459800	Weak transcription	Gastric	stomach
15	chr8:19451000-19455400	Weak transcription	Primary T cells from cord blood	blood
16	chr8:19451000-19459800	Weak transcription	Lung	lung
17	chr8:19451600-19456200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr8:19451600-19457400	Weak transcription	Right Atrium	heart
19	chr8:19451800-19459200	Weak transcription	NHLF	lung
20	chr8:19452200-19455600	Weak transcription	Fetal Lung	lung
21	chr8:19452800-19457600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr8:19453400-19454600	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr8:19453600-19454400	Enhancers	GM12878-XiMat	blood
24	chr8:19453600-19454800	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr8:19453600-19459800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr8:19453800-19458600	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr8:19454000-19455400	Weak transcription	Primary B cells from peripheral blood	blood
28	chr8:19454000-19457200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr8:19454000-19458000	Genic enhancers	A549	lung
30	chr8:19454000-19458400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr8:19454200-19455000	Weak transcription	Primary B cells from cord blood	blood
32	chr8:19454200-19460800	Weak transcription	Hela-S3	cervix

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