Variant report

Variant	rs6586868
Chromosome Location	chr8:19671419-19671420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10283069	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10888172	0.81[EUR][1000 genomes]
rs11204071	0.81[EUR][1000 genomes]
rs12056608	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12542375	0.89[AFR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12547438	0.81[EUR][1000 genomes]
rs13258148	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17091510	0.81[ASN][1000 genomes]
rs17091543	0.81[AFR][1000 genomes]
rs17091544	0.81[AFR][1000 genomes]
rs17410190	0.81[EUR][1000 genomes]
rs17482069	0.81[EUR][1000 genomes]
rs17482110	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1837846	0.81[EUR][1000 genomes]
rs2083639	0.81[ASN][1000 genomes]
rs4398934	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7822373	0.83[AFR][1000 genomes]
rs9325863	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890625	chr8:19368697-19799641	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv610759	chr8:19561997-20068842	Enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19670600-19673800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:19670600-19673800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:19670600-19674000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:19671400-19674000	Weak transcription	Primary B cells from peripheral blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links