Variant report

Variant	rs6587521
Chromosome Location	chr1:150741223-150741224
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11204728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1415147	1.00[AMR][1000 genomes]
rs6587519	1.00[AMR][1000 genomes]
rs6587522	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6587534	1.00[AMR][1000 genomes]
rs7515228	1.00[AMR][1000 genomes]
rs7517945	1.00[AMR][1000 genomes]
rs7518440	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7518546	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2829859	chr1:150608894-150937329	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv872417	chr1:150618632-150759979	Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv872418	chr1:150683512-150860471	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv1008381	chr1:150721254-150745558	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv437169	chr1:150738197-150816886	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150737200-150761800	Weak transcription	Spleen	Spleen
2	chr1:150738600-150743200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr1:150738600-150743200	Weak transcription	Thymus	Thymus
4	chr1:150738800-150742800	Weak transcription	Fetal Thymus	thymus
5	chr1:150738800-150743000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr1:150738800-150743000	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr1:150738800-150743000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr1:150738800-150743200	Weak transcription	Primary T cells from cord blood	blood
9	chr1:150738800-150743200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr1:150738800-150743200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr1:150738800-150743200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr1:150738800-150743200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr1:150738800-150743200	Weak transcription	Dnd41	blood
14	chr1:150738800-150743400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr1:150739000-150743200	Weak transcription	Primary B cells from peripheral blood	blood
16	chr1:150739000-150743200	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr1:150739000-150743400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr1:150739200-150743000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr1:150739200-150743400	Weak transcription	Primary B cells from cord blood	blood
20	chr1:150739400-150742800	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr1:150740600-150741600	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr1:150740600-150743000	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr1:150740600-150743200	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr1:150740800-150743000	Weak transcription	GM12878-XiMat	blood

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