Variant report

Variant	rs6587620
Chromosome Location	chr1:151794794-151794795
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:151762692..151764712-chr1:151794747..151796682,2	MCF-7	breast:
2	chr1:151789315..151792282-chr1:151793123..151796667,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182134	Chromatin interaction
ENSG00000203288	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11204895	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12036145	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12144914	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6693413	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7531041	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7540027	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7540034	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7540530	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516369	chr1:151780177-151820324	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	esv1804657	chr1:151784152-151825756	Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv1008033	chr1:151785029-151843154	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv160848	chr1:151789609-151796769	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151778600-151802400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr1:151784800-151794800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr1:151786800-151795000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr1:151787400-151800000	Weak transcription	Spleen	Spleen
5	chr1:151788200-151796800	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
6	chr1:151790000-151799000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
7	chr1:151790200-151801600	Weak transcription	Right Atrium	heart
8	chr1:151791000-151800600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr1:151791600-151795600	Enhancers	Liver	Liver
10	chr1:151792000-151795000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr1:151792000-151796000	Flanking Active TSS	Dnd41	blood
12	chr1:151792200-151795000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr1:151792200-151795400	Enhancers	Primary hematopoietic stem cells	blood
14	chr1:151792400-151795200	Enhancers	Primary T cells from cord blood	blood
15	chr1:151792400-151795200	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr1:151792400-151795200	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr1:151792800-151795000	Enhancers	Pancreas	Pancrea
18	chr1:151793000-151795400	Enhancers	GM12878-XiMat	blood
19	chr1:151793000-151800600	Weak transcription	Lung	lung
20	chr1:151793200-151795000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr1:151793400-151800200	Weak transcription	Gastric	stomach
22	chr1:151793600-151794800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
23	chr1:151793600-151800800	Weak transcription	Stomach Mucosa	stomach
24	chr1:151793600-151801000	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr1:151793800-151797600	Weak transcription	Adipose Nuclei	Adipose
26	chr1:151793800-151797600	Weak transcription	Psoas Muscle	Psoas
27	chr1:151793800-151797600	Weak transcription	Right Ventricle	heart
28	chr1:151794000-151795000	Active TSS	Thymus	Thymus
29	chr1:151794000-151795200	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr1:151794000-151798200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr1:151794000-151798400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr1:151794000-151798600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr1:151794200-151795000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr1:151794200-151796200	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr1:151794400-151794800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr1:151794400-151795400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
37	chr1:151794400-151795800	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr1:151794400-151797400	Genic enhancers	Skeletal Muscle Male	skeletal muscle
39	chr1:151794600-151795200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr1:151794600-151795200	Weak transcription	Duodenum Mucosa	Duodenum
41	chr1:151794600-151795400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr1:151794600-151795400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr1:151794600-151796000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr1:151794600-151797800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr1:151794600-151798800	Weak transcription	Hela-S3	cervix

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