Variant report

Variant	rs6587680
Chromosome Location	chr1:149869351-149869352
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1044808	0.80[EUR][1000 genomes]
rs12062387	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1349532	0.80[EUR][1000 genomes]
rs1376675	0.80[EUR][1000 genomes]
rs1376676	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1451641	0.80[EUR][1000 genomes]
rs55633017	0.80[EUR][1000 genomes]
rs55664407	0.80[EUR][1000 genomes]
rs56119131	0.80[EUR][1000 genomes]
rs56139516	0.80[EUR][1000 genomes]
rs56229803	0.80[EUR][1000 genomes]
rs61355654	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72708151	0.80[EUR][1000 genomes]
rs72708152	0.80[EUR][1000 genomes]
rs72708153	0.80[EUR][1000 genomes]
rs72708157	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432820	chr1:148921404-149920927	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	784 gene(s)	inside rSNPs	diseases
2	nsv831525	chr1:149701537-149878033	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	424 gene(s)	inside rSNPs	diseases
3	nsv831537	chr1:149833357-150064655	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	431 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:149860800-149870600	Weak transcription	HepG2	liver
2	chr1:149860800-149871200	Weak transcription	Right Atrium	heart
3	chr1:149861000-149871000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr1:149861400-149870800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:149869000-149870800	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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