Variant report

Variant	rs6587736
Chromosome Location	chr1:153265654-153265655
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:153264686..153267365-chr1:153334525..153337537,3	MCF-7	breast:
2	chr1:153253921..153255603-chr1:153263239..153265822,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10888549	0.90[ASN][1000 genomes]
rs11205261	0.95[ASN][1000 genomes]
rs11205265	0.89[ASN][1000 genomes]
rs11585177	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12028855	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12039260	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12127371	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12723766	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2916238	0.95[ASN][1000 genomes]
rs3856024	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3886614	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4319268	0.87[ASN][1000 genomes]
rs6587735	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001834	chr1:152648853-153279143	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv1010488	chr1:152901263-153670972	Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
3	nsv535171	chr1:152901263-153670972	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
4	nsv533877	chr1:152923645-153468131	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	nsv999024	chr1:153255005-153325685	Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:153261400-153269400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:153262000-153266200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:153263400-153266800	Enhancers	HMEC	breast
4	chr1:153263600-153266400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr1:153263600-153266800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:153263600-153266800	Enhancers	GM12878-XiMat	blood
7	chr1:153264000-153266800	Enhancers	Primary hematopoietic stem cells	blood
8	chr1:153264200-153266400	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr1:153264200-153268400	Enhancers	Primary B cells from peripheral blood	blood
10	chr1:153264600-153266000	Bivalent Enhancer	Placenta	Placenta
11	chr1:153264600-153267200	Enhancers	Primary T cells from cord blood	blood
12	chr1:153264600-153267200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr1:153264800-153266000	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr1:153264800-153266000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr1:153264800-153266400	Enhancers	Fetal Thymus	thymus
16	chr1:153264800-153266800	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr1:153264800-153267200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
18	chr1:153265000-153265800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr1:153265000-153266000	Enhancers	H1 Cell Line	embryonic stem cell
20	chr1:153265000-153266200	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr1:153265000-153267800	Enhancers	Primary B cells from cord blood	blood
22	chr1:153265200-153266800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr1:153265200-153266800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr1:153265200-153266800	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr1:153265200-153266800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr1:153265200-153267000	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr1:153265200-153267800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr1:153265400-153266000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr1:153265400-153266200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr1:153265400-153266400	Flanking Active TSS	NHEK	skin
31	chr1:153265400-153266800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr1:153265600-153265800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
33	chr1:153265600-153266000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr1:153265600-153266000	Active TSS	Esophagus	oesophagus
35	chr1:153265600-153266800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
36	chr1:153265600-153267600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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