Variant report

Variant	rs6588344
Chromosome Location	chr1:69446281-69446282
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs72682249	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7545526	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870641	chr1:69338706-69446281	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:69442000-69446400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:69442800-69446400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:69444800-69446600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr1:69445400-69446400	Enhancers	H1 Cell Line	embryonic stem cell
5	chr1:69446000-69449400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:69446200-69446400	Enhancers	H9 Cell Line	embryonic stem cell
7	chr1:69446200-69446400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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