Variant report

Variant	rs658957
Chromosome Location	chr12:122409664-122409665
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:122403424..122405095-chr12:122408699..122410870,2	K562	blood:
2	chr12:122400159..122402861-chr12:122407797..122409946,2	MCF-7	breast:
3	chr12:122403298..122406654-chr12:122407062..122410131,3	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1169076	0.81[ASN][1000 genomes]
rs1169079	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1169081	0.86[ASN][1000 genomes]
rs1177589	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1184893	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1375653	0.81[AMR][1000 genomes]
rs1375654	0.81[AMR][1000 genomes]
rs1375655	0.81[AMR][1000 genomes]
rs1630699	0.81[AMR][1000 genomes]
rs1667586	0.80[AMR][1000 genomes]
rs1678952	0.81[AMR][1000 genomes]
rs1678953	0.81[AMR][1000 genomes]
rs1720030	0.81[AMR][1000 genomes]
rs2309275	0.85[ASN][1000 genomes]
rs529736	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs671293	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs686220	0.81[AMR][1000 genomes]
rs745327	0.88[ASN][1000 genomes]
rs830115	0.86[ASN][1000 genomes]
rs830118	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs830120	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs830121	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529868	chr12:121956483-122944265	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
2	nsv916686	chr12:122240149-122714056	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv899568	chr12:122254713-122456524	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	esv34001	chr12:122298737-122521637	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:122375800-122415800	Weak transcription	Liver	Liver
2	chr12:122376000-122413000	Weak transcription	Aorta	Aorta
3	chr12:122391400-122410800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr12:122391800-122410800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr12:122394000-122429800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr12:122394200-122411000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr12:122394200-122411200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr12:122396600-122439200	Weak transcription	Brain Anterior Caudate	brain
9	chr12:122396800-122410800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr12:122399000-122411000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr12:122399000-122411000	Weak transcription	Gastric	stomach
12	chr12:122402000-122412400	Weak transcription	Ovary	ovary
13	chr12:122402000-122412800	Weak transcription	Spleen	Spleen
14	chr12:122403400-122410800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr12:122403400-122411000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr12:122403400-122417200	Weak transcription	NHDF-Ad	bronchial
17	chr12:122403800-122412400	Weak transcription	HSMM	muscle
18	chr12:122403800-122412600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr12:122404000-122410000	Weak transcription	HMEC	breast
20	chr12:122404000-122410800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr12:122404000-122412400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr12:122404600-122409800	Strong transcription	NHEK	skin
23	chr12:122404800-122409800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr12:122404800-122410000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr12:122404800-122410000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr12:122404800-122410000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr12:122404800-122411000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr12:122405000-122409800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr12:122405200-122409800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr12:122405200-122412400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr12:122406200-122416800	Weak transcription	K562	blood
32	chr12:122406400-122411200	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr12:122406600-122418200	Weak transcription	Osteobl	bone
34	chr12:122407000-122410800	Weak transcription	Fetal Stomach	stomach
35	chr12:122407000-122412800	Weak transcription	Right Atrium	heart
36	chr12:122407200-122411000	Weak transcription	Thymus	Thymus
37	chr12:122407400-122411000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr12:122407600-122412200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr12:122408000-122411200	Weak transcription	Stomach Smooth Muscle	stomach
40	chr12:122408200-122411000	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr12:122408600-122414400	Weak transcription	NHLF	lung
42	chr12:122408800-122411200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr12:122409000-122410600	Weak transcription	Fetal Intestine Small	intestine
44	chr12:122409200-122412200	Weak transcription	Right Ventricle	heart
45	chr12:122409200-122412400	Weak transcription	Pancreas	Pancrea
46	chr12:122409400-122410200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr12:122409400-122412000	Weak transcription	Fetal Heart	heart
48	chr12:122409400-122412000	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr12:122409400-122412200	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr12:122409400-122412200	Weak transcription	HSMMtube	muscle

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